RNA–Protein interactions for RNA: ENST00000238682.7

TGFB3-201, Transcript of transforming growth factor beta 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TGFB3, Length 2,522 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFB3-201ENST00000238682 NISCHQ9Y2I1 1504 aa22.09■■□□□ 1.13
TGFB3-201ENST00000238682 CCDC180Q9P1Z9 1646 aa20■□□□□ 0.79
TGFB3-201ENST00000238682 ABCC9O60706 1549 aa19.38■□□□□ 0.69
TGFB3-201ENST00000238682 RB1CC1Q8TDY2 1594 aa18.86■□□□□ 0.61
TGFB3-201ENST00000238682 NACADO15069 1562 aa18.82■□□□□ 0.6
TGFB3-201ENST00000238682 MYO15BQ96JP2 1530 aa18.77■□□□□ 0.6
TGFB3-201ENST00000238682 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
TGFB3-201ENST00000238682 SHROOM4Q9ULL8 1493 aa18.39■□□□□ 0.53
TGFB3-201ENST00000238682 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
TGFB3-201ENST00000238682 UNC13AQ9UPW8 1703 aa18.2■□□□□ 0.5
TGFB3-201ENST00000238682 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
TGFB3-201ENST00000238682 DCAF8L2P0C7V8 631 aa18.08■□□□□ 0.49
TGFB3-201ENST00000238682 PABPN1Q86U42 306 aaKnown RBP eCLIP17.91■□□□□ 0.46
TGFB3-201ENST00000238682 DNAJC5BQ9UF47 199 aa17.87■□□□□ 0.45
TGFB3-201ENST00000238682 SCRIBQ14160 1630 aa17.84■□□□□ 0.45
TGFB3-201ENST00000238682 EIF4G1Q04637 1599 aaKnown RBP17.71■□□□□ 0.43
TGFB3-201ENST00000238682 CC2D2AQ9P2K1 1620 aa17.66■□□□□ 0.42
TGFB3-201ENST00000238682 CECR2Q9BXF3 1484 aa17.59■□□□□ 0.41
TGFB3-201ENST00000238682 CHIC1Q5VXU3 224 aa17.5■□□□□ 0.39
TGFB3-201ENST00000238682 SLC24A1O60721 1099 aa17.35■□□□□ 0.37
TGFB3-201ENST00000238682 NCAPD3P42695 1498 aa17.29■□□□□ 0.36
TGFB3-201ENST00000238682 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
TGFB3-201ENST00000238682 HMGXB3Q12766 1538 aa17.26■□□□□ 0.35
TGFB3-201ENST00000238682 BAZ1AQ9NRL2 1556 aaPredicted RBP17.22■□□□□ 0.35
TGFB3-201ENST00000238682 SMARCA4P51532 1647 aa17.2■□□□□ 0.34
TGFB3-201ENST00000238682 PEG3Q9GZU2 1588 aa17.19■□□□□ 0.34
TGFB3-201ENST00000238682 ATAD2BQ9ULI0 1458 aa17.16■□□□□ 0.34
TGFB3-201ENST00000238682 CUX2O14529 1486 aa17.02■□□□□ 0.32
TGFB3-201ENST00000238682 BAZ1BQ9UIG0 1483 aaKnown RBP17.01■□□□□ 0.31
TGFB3-201ENST00000238682 LAMC3Q9Y6N6 1575 aa16.92■□□□□ 0.3
TGFB3-201ENST00000238682 MROH2BQ7Z745 1585 aa16.87■□□□□ 0.29
TGFB3-201ENST00000238682 ERCC6Q03468 1493 aa16.86■□□□□ 0.29
TGFB3-201ENST00000238682 EHMT2Q96KQ7 1210 aa16.78■□□□□ 0.28
TGFB3-201ENST00000238682 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.28
TGFB3-201ENST00000238682 THOC2Q8NI27 1593 aaKnown RBP16.71■□□□□ 0.27
TGFB3-201ENST00000238682 AEBP2Q6ZN18 517 aaPredicted RBP16.71■□□□□ 0.27
TGFB3-201ENST00000238682 CADPSQ9ULU8 1353 aa16.69■□□□□ 0.26
TGFB3-201ENST00000238682 TOP2AP11388 1531 aaKnown RBP16.68■□□□□ 0.26
TGFB3-201ENST00000238682 NESP48681 1621 aa16.64■□□□□ 0.25
TGFB3-201ENST00000238682 WIZO95785 1651 aa16.64■□□□□ 0.25
TGFB3-201ENST00000238682 RSF1Q96T23 1441 aaPredicted RBP16.62■□□□□ 0.25
TGFB3-201ENST00000238682 MRC2Q9UBG0 1479 aa16.6■□□□□ 0.25
TGFB3-201ENST00000238682 WDR62O43379 1518 aa16.58■□□□□ 0.25
TGFB3-201ENST00000238682 DNAJC5Q9H3Z4 198 aa16.58■□□□□ 0.24
TGFB3-201ENST00000238682 KIF21AQ7Z4S6 1674 aa16.57■□□□□ 0.24
TGFB3-201ENST00000238682 CFTRP13569 1480 aa16.56■□□□□ 0.24
TGFB3-201ENST00000238682 CEP164Q9UPV0 1460 aa16.53■□□□□ 0.24
TGFB3-201ENST00000238682 PRDM2Q13029 1718 aa16.52■□□□□ 0.23
TGFB3-201ENST00000238682 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
TGFB3-201ENST00000238682 ABCC8Q09428 1581 aa16.4■□□□□ 0.22
TGFB3-201ENST00000238682 PLPPR3Q6T4P5 718 aa16.34■□□□□ 0.21
TGFB3-201ENST00000238682 CCDC88BA6NC98 1476 aa16.32■□□□□ 0.2
TGFB3-201ENST00000238682 URB2Q14146 1524 aaKnown RBP16.27■□□□□ 0.2
TGFB3-201ENST00000238682 IFT140Q96RY7 1462 aa16.27■□□□□ 0.19
TGFB3-201ENST00000238682 WDR97A6NE52 1622 aa16.24■□□□□ 0.19
TGFB3-201ENST00000238682 DNMBPQ6XZF7 1577 aa16.23■□□□□ 0.19
TGFB3-201ENST00000238682 TOPBP1Q92547 1522 aa16.18■□□□□ 0.18
TGFB3-201ENST00000238682 SUPT5HO00267 1087 aaKnown RBP16.15■□□□□ 0.18
TGFB3-201ENST00000238682 TARBP1Q13395 1621 aaKnown RBP16.05■□□□□ 0.16
TGFB3-201ENST00000238682 EIF4G3O43432 1585 aaKnown RBP16.02■□□□□ 0.16
TGFB3-201ENST00000238682 OSCARQ8IYS5 282 aa16.02■□□□□ 0.16
TGFB3-201ENST00000238682 RTN4Q9NQC3 1192 aaKnown RBP16.02■□□□□ 0.15
TGFB3-201ENST00000238682 PHF23Q9BUL5 403 aaPredicted RBP16.01■□□□□ 0.15
TGFB3-201ENST00000238682 POLA1P09884 1462 aaPredicted RBP15.99■□□□□ 0.15
TGFB3-201ENST00000238682 ZNF608Q9ULD9 1512 aaPredicted RBP15.94■□□□□ 0.14
TGFB3-201ENST00000238682 MAGI1Q96QZ7 1491 aaPredicted RBP15.92■□□□□ 0.14
TGFB3-201ENST00000238682 SOGA1O94964 1423 aa15.91■□□□□ 0.14
TGFB3-201ENST00000238682 FGD5Q6ZNL6 1462 aa15.9■□□□□ 0.14
TGFB3-201ENST00000238682 CUX1P39880 1505 aa15.89■□□□□ 0.14
TGFB3-201ENST00000238682 GRIN2BQ13224 1484 aa15.87■□□□□ 0.13
TGFB3-201ENST00000238682 ABCA10Q8WWZ4 1543 aa15.85■□□□□ 0.13
TGFB3-201ENST00000238682 BIVM-ERCC5R4GMW8 1640 aa15.84■□□□□ 0.13
TGFB3-201ENST00000238682 SYNJ1O43426 1573 aa15.82■□□□□ 0.12
TGFB3-201ENST00000238682 CHD1O14646 1710 aa15.82■□□□□ 0.12
TGFB3-201ENST00000238682 RIMBP3CA6NJZ7 1639 aa15.82■□□□□ 0.12
TGFB3-201ENST00000238682 RIMBP3BA6NNM3 1639 aa15.82■□□□□ 0.12
TGFB3-201ENST00000238682 RIMBP3Q9UFD9 1639 aa15.82■□□□□ 0.12
TGFB3-201ENST00000238682 ABCA5Q8WWZ7 1642 aa15.8■□□□□ 0.12
TGFB3-201ENST00000238682 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.12
TGFB3-201ENST00000238682 SYNJ2O15056 1496 aa15.8■□□□□ 0.12
TGFB3-201ENST00000238682 TOP2BQ02880 1626 aa15.79■□□□□ 0.12
TGFB3-201ENST00000238682 ARHGEF11O15085 1522 aa15.79■□□□□ 0.12
TGFB3-201ENST00000238682 CLASP1Q7Z460 1538 aa15.79■□□□□ 0.12
TGFB3-201ENST00000238682 RAD54L2Q9Y4B4 1467 aa15.78■□□□□ 0.12
TGFB3-201ENST00000238682 SNAPC4Q5SXM2 1469 aa15.77■□□□□ 0.12
TGFB3-201ENST00000238682 WRNQ14191 1432 aaPredicted RBP eCLIP15.77■□□□□ 0.12
TGFB3-201ENST00000238682 PBRM1Q86U86 1689 aa15.77■□□□□ 0.11
TGFB3-201ENST00000238682 GAPVD1Q14C86 1478 aa15.75■□□□□ 0.11
TGFB3-201ENST00000238682 ERICH3Q5RHP9 1530 aa15.71■□□□□ 0.11
TGFB3-201ENST00000238682 TDRD9Q8NDG6 1382 aaKnown RBP15.7■□□□□ 0.1
TGFB3-201ENST00000238682 ADAMTS12P58397 1594 aa15.67■□□□□ 0.1
TGFB3-201ENST00000238682 TRIM41Q8WV44 630 aa15.65■□□□□ 0.1
TGFB3-201ENST00000238682 FHAD1B1AJZ9 1412 aa15.65■□□□□ 0.1
TGFB3-201ENST00000238682 CHMP7Q8WUX9 453 aaPredicted RBP15.64■□□□□ 0.09
TGFB3-201ENST00000238682 PELP1Q8IZL8 1130 aaKnown RBP15.62■□□□□ 0.09
TGFB3-201ENST00000238682 ARAP1Q96P48 1450 aa15.62■□□□□ 0.09
TGFB3-201ENST00000238682 NUP160Q12769 1436 aa15.61■□□□□ 0.09
TGFB3-201ENST00000238682 GRIN2AQ12879 1464 aa15.61■□□□□ 0.09
TGFB3-201ENST00000238682 KCNA4P22459 653 aa15.6■□□□□ 0.09
TGFB3-201ENST00000238682 MYT1Q01538 1121 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms