RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 AEBP2Q6ZN18 517 aaPredicted RBP27.69■■■□□ 2.02
SF3B6-201ENST00000233468 NISCHQ9Y2I1 1504 aa27.05■■□□□ 1.92
SF3B6-201ENST00000233468 CHIC1Q5VXU3 224 aa26.77■■□□□ 1.88
SF3B6-201ENST00000233468 ABCC9O60706 1549 aa24.47■■□□□ 1.51
SF3B6-201ENST00000233468 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
SF3B6-201ENST00000233468 SENP3Q9H4L4 574 aaPredicted RBP23.6■■□□□ 1.37
SF3B6-201ENST00000233468 PHF23Q9BUL5 403 aaPredicted RBP23.49■■□□□ 1.35
SF3B6-201ENST00000233468 RB1CC1Q8TDY2 1594 aa23.17■■□□□ 1.3
SF3B6-201ENST00000233468 DNAJC5BQ9UF47 199 aa23.12■■□□□ 1.29
SF3B6-201ENST00000233468 NACADO15069 1562 aa22.97■■□□□ 1.27
SF3B6-201ENST00000233468 DCAF8L2P0C7V8 631 aa22.95■■□□□ 1.26
SF3B6-201ENST00000233468 PABPN1Q86U42 306 aaKnown RBP eCLIP22.8■■□□□ 1.24
SF3B6-201ENST00000233468 UNC13AQ9UPW8 1703 aa22.79■■□□□ 1.24
SF3B6-201ENST00000233468 BICRAQ9NZM4 1560 aa22.58■■□□□ 1.2
SF3B6-201ENST00000233468 MYO15BQ96JP2 1530 aa22.57■■□□□ 1.2
SF3B6-201ENST00000233468 ZCCHC6Q5VYS8 1495 aaKnown RBP22.41■■□□□ 1.18
SF3B6-201ENST00000233468 DCAF1Q9Y4B6 1507 aa22.29■■□□□ 1.16
SF3B6-201ENST00000233468 SCRIBQ14160 1630 aa22.2■■□□□ 1.15
SF3B6-201ENST00000233468 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
SF3B6-201ENST00000233468 SHROOM4Q9ULL8 1493 aa22.07■■□□□ 1.12
SF3B6-201ENST00000233468 CECR2Q9BXF3 1484 aa22.01■■□□□ 1.11
SF3B6-201ENST00000233468 EIF4G1Q04637 1599 aaKnown RBP21.99■■□□□ 1.11
SF3B6-201ENST00000233468 FOXD1Q16676 465 aa21.9■■□□□ 1.1
SF3B6-201ENST00000233468 PLPPR3Q6T4P5 718 aa21.64■■□□□ 1.05
SF3B6-201ENST00000233468 NCAPD3P42695 1498 aa21.21■□□□□ 0.99
SF3B6-201ENST00000233468 DNAJC5Q9H3Z4 198 aa21.2■□□□□ 0.98
SF3B6-201ENST00000233468 ATAD2BQ9ULI0 1458 aa21.17■□□□□ 0.98
SF3B6-201ENST00000233468 SMARCA4P51532 1647 aa21.14■□□□□ 0.97
SF3B6-201ENST00000233468 ERCC6Q03468 1493 aa21.07■□□□□ 0.96
SF3B6-201ENST00000233468 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
SF3B6-201ENST00000233468 HMGXB3Q12766 1538 aa21.04■□□□□ 0.96
SF3B6-201ENST00000233468 CUX2O14529 1486 aa21.03■□□□□ 0.96
SF3B6-201ENST00000233468 NESP48681 1621 aa21.02■□□□□ 0.96
SF3B6-201ENST00000233468 BAZ1AQ9NRL2 1556 aaPredicted RBP20.97■□□□□ 0.95
SF3B6-201ENST00000233468 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
SF3B6-201ENST00000233468 MROH2BQ7Z745 1585 aa20.89■□□□□ 0.94
SF3B6-201ENST00000233468 PEG3Q9GZU2 1588 aa20.89■□□□□ 0.93
SF3B6-201ENST00000233468 ADRA2BP18089 450 aa20.84■□□□□ 0.93
SF3B6-201ENST00000233468 PPP6R1Q9UPN7 881 aa20.83■□□□□ 0.93
SF3B6-201ENST00000233468 THOC2Q8NI27 1593 aaKnown RBP20.78■□□□□ 0.92
SF3B6-201ENST00000233468 LAMC3Q9Y6N6 1575 aa20.76■□□□□ 0.91
SF3B6-201ENST00000233468 KIF21AQ7Z4S6 1674 aa20.75■□□□□ 0.91
SF3B6-201ENST00000233468 WIZO95785 1651 aa20.67■□□□□ 0.9
SF3B6-201ENST00000233468 PIAS4Q8N2W9 510 aaPredicted RBP20.66■□□□□ 0.9
SF3B6-201ENST00000233468 PDS5BQ9NTI5 1447 aa20.61■□□□□ 0.89
SF3B6-201ENST00000233468 CADPSQ9ULU8 1353 aa20.58■□□□□ 0.88
SF3B6-201ENST00000233468 RSF1Q96T23 1441 aaPredicted RBP20.55■□□□□ 0.88
SF3B6-201ENST00000233468 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
SF3B6-201ENST00000233468 WDR62O43379 1518 aa20.43■□□□□ 0.86
SF3B6-201ENST00000233468 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
SF3B6-201ENST00000233468 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
SF3B6-201ENST00000233468 MSH5O43196 834 aa20.36■□□□□ 0.85
SF3B6-201ENST00000233468 CFTRP13569 1480 aa20.31■□□□□ 0.84
SF3B6-201ENST00000233468 TOP2AP11388 1531 aaKnown RBP20.3■□□□□ 0.84
SF3B6-201ENST00000233468 TRIM41Q8WV44 630 aa20.28■□□□□ 0.84
SF3B6-201ENST00000233468 URB2Q14146 1524 aaKnown RBP20.24■□□□□ 0.83
SF3B6-201ENST00000233468 SUPT5HO00267 1087 aaKnown RBP20.17■□□□□ 0.82
SF3B6-201ENST00000233468 PRDM2Q13029 1718 aa20.16■□□□□ 0.82
SF3B6-201ENST00000233468 CCDC88BA6NC98 1476 aa20.12■□□□□ 0.81
SF3B6-201ENST00000233468 OSCARQ8IYS5 282 aa20.09■□□□□ 0.81
SF3B6-201ENST00000233468 ZNF608Q9ULD9 1512 aaPredicted RBP20.02■□□□□ 0.8
SF3B6-201ENST00000233468 TOPBP1Q92547 1522 aa19.98■□□□□ 0.79
SF3B6-201ENST00000233468 IFT140Q96RY7 1462 aa19.95■□□□□ 0.78
SF3B6-201ENST00000233468 RIMBP3CA6NJZ7 1639 aa19.91■□□□□ 0.78
SF3B6-201ENST00000233468 RIMBP3BA6NNM3 1639 aa19.91■□□□□ 0.78
SF3B6-201ENST00000233468 RIMBP3Q9UFD9 1639 aa19.91■□□□□ 0.78
SF3B6-201ENST00000233468 EIF4G3O43432 1585 aaKnown RBP19.87■□□□□ 0.77
SF3B6-201ENST00000233468 DNMBPQ6XZF7 1577 aa19.87■□□□□ 0.77
SF3B6-201ENST00000233468 ABCC8Q09428 1581 aa19.84■□□□□ 0.77
SF3B6-201ENST00000233468 TARBP1Q13395 1621 aaKnown RBP19.83■□□□□ 0.76
SF3B6-201ENST00000233468 AQRO60306 1485 aaKnown RBP eCLIP19.82■□□□□ 0.76
SF3B6-201ENST00000233468 CHD1O14646 1710 aa19.8■□□□□ 0.76
SF3B6-201ENST00000233468 ARHGEF11O15085 1522 aa19.79■□□□□ 0.76
SF3B6-201ENST00000233468 POLA1P09884 1462 aaPredicted RBP19.76■□□□□ 0.75
SF3B6-201ENST00000233468 RAD54L2Q9Y4B4 1467 aa19.74■□□□□ 0.75
SF3B6-201ENST00000233468 FBLN2P98095 1184 aa19.71■□□□□ 0.75
SF3B6-201ENST00000233468 CYB5RLQ6IPT4 315 aa19.68■□□□□ 0.74
SF3B6-201ENST00000233468 TDRD9Q8NDG6 1382 aaKnown RBP19.68■□□□□ 0.74
SF3B6-201ENST00000233468 SOGA1O94964 1423 aa19.67■□□□□ 0.74
SF3B6-201ENST00000233468 FGD5Q6ZNL6 1462 aa19.63■□□□□ 0.73
SF3B6-201ENST00000233468 CUX1P39880 1505 aa19.62■□□□□ 0.73
SF3B6-201ENST00000233468 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
SF3B6-201ENST00000233468 SNAPC4Q5SXM2 1469 aa19.58■□□□□ 0.72
SF3B6-201ENST00000233468 WDR97A6NE52 1622 aa19.51■□□□□ 0.71
SF3B6-201ENST00000233468 CLASP1Q7Z460 1538 aa19.51■□□□□ 0.71
SF3B6-201ENST00000233468 CHMP7Q8WUX9 453 aaPredicted RBP19.5■□□□□ 0.71
SF3B6-201ENST00000233468 TRHP20396 242 aaPredicted RBP19.48■□□□□ 0.71
SF3B6-201ENST00000233468 GRIN2BQ13224 1484 aa19.48■□□□□ 0.71
SF3B6-201ENST00000233468 MAGI1Q96QZ7 1491 aaPredicted RBP19.48■□□□□ 0.71
SF3B6-201ENST00000233468 PBRM1Q86U86 1689 aa19.47■□□□□ 0.71
SF3B6-201ENST00000233468 SYNJ1O43426 1573 aa19.44■□□□□ 0.7
SF3B6-201ENST00000233468 SYNJ2O15056 1496 aa19.42■□□□□ 0.7
SF3B6-201ENST00000233468 GAPVD1Q14C86 1478 aa19.42■□□□□ 0.7
SF3B6-201ENST00000233468 WRNQ14191 1432 aaPredicted RBP eCLIP19.41■□□□□ 0.7
SF3B6-201ENST00000233468 ABCA5Q8WWZ7 1642 aa19.38■□□□□ 0.69
SF3B6-201ENST00000233468 ABCA10Q8WWZ4 1543 aa19.37■□□□□ 0.69
SF3B6-201ENST00000233468 ERCC6L2Q5T890 1561 aa19.27■□□□□ 0.68
SF3B6-201ENST00000233468 TOP2BQ02880 1626 aa19.27■□□□□ 0.68
SF3B6-201ENST00000233468 BIVM-ERCC5R4GMW8 1640 aa19.26■□□□□ 0.67
SF3B6-201ENST00000233468 GRIN2AQ12879 1464 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms