RNA–Protein interactions for RNA: ENST00000221973.7

LIM2-201, Transcript of lens intrinsic membrane protein 2, humanhuman

TSL 1 (best) BASIC

Gene LIM2, Length 983 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2-201ENST00000221973 NISCHQ9Y2I1 1504 aa39.59■■■■□ 3.93
LIM2-201ENST00000221973 CCDC180Q9P1Z9 1646 aa35.46■■■■□ 3.27
LIM2-201ENST00000221973 ABCC9O60706 1549 aa35.42■■■■□ 3.26
LIM2-201ENST00000221973 RB1CC1Q8TDY2 1594 aa33.7■■■□□ 2.99
LIM2-201ENST00000221973 NACADO15069 1562 aa33.51■■■□□ 2.95
LIM2-201ENST00000221973 DCAF8L2P0C7V8 631 aa33.28■■■□□ 2.92
LIM2-201ENST00000221973 DNAJC5BQ9UF47 199 aa33.27■■■□□ 2.92
LIM2-201ENST00000221973 MYO15BQ96JP2 1530 aa33.11■■■□□ 2.89
LIM2-201ENST00000221973 UNC13AQ9UPW8 1703 aa33.01■■■□□ 2.87
LIM2-201ENST00000221973 PABPN1Q86U42 306 aaKnown RBP eCLIP32.99■■■□□ 2.87
LIM2-201ENST00000221973 ZCCHC6Q5VYS8 1495 aaKnown RBP32.83■■■□□ 2.85
LIM2-201ENST00000221973 BICRAQ9NZM4 1560 aa32.83■■■□□ 2.85
LIM2-201ENST00000221973 DCAF1Q9Y4B6 1507 aa32.71■■■□□ 2.83
LIM2-201ENST00000221973 SCRIBQ14160 1630 aa32.31■■■□□ 2.76
LIM2-201ENST00000221973 SHROOM4Q9ULL8 1493 aa32.3■■■□□ 2.76
LIM2-201ENST00000221973 CC2D2AQ9P2K1 1620 aa32.01■■■□□ 2.72
LIM2-201ENST00000221973 EIF4G1Q04637 1599 aaKnown RBP31.95■■■□□ 2.71
LIM2-201ENST00000221973 CECR2Q9BXF3 1484 aa31.89■■■□□ 2.7
LIM2-201ENST00000221973 NCAPD3P42695 1498 aa30.97■■■□□ 2.55
LIM2-201ENST00000221973 ATAD2BQ9ULI0 1458 aa30.89■■■□□ 2.54
LIM2-201ENST00000221973 SMARCA4P51532 1647 aa30.85■■■□□ 2.53
LIM2-201ENST00000221973 SMARCA2P51531 1590 aa30.75■■■□□ 2.51
LIM2-201ENST00000221973 HMGXB3Q12766 1538 aa30.73■■■□□ 2.51
LIM2-201ENST00000221973 BAZ1AQ9NRL2 1556 aaPredicted RBP30.68■■■□□ 2.5
LIM2-201ENST00000221973 PEG3Q9GZU2 1588 aa30.58■■■□□ 2.49
LIM2-201ENST00000221973 BAZ1BQ9UIG0 1483 aaKnown RBP30.54■■■□□ 2.48
LIM2-201ENST00000221973 MROH2BQ7Z745 1585 aa30.53■■■□□ 2.48
LIM2-201ENST00000221973 ERCC6Q03468 1493 aa30.5■■■□□ 2.47
LIM2-201ENST00000221973 NESP48681 1621 aa30.48■■■□□ 2.47
LIM2-201ENST00000221973 CUX2O14529 1486 aa30.48■■■□□ 2.47
LIM2-201ENST00000221973 DNAJC5Q9H3Z4 198 aa30.44■■■□□ 2.46
LIM2-201ENST00000221973 LAMC3Q9Y6N6 1575 aa30.22■■■□□ 2.43
LIM2-201ENST00000221973 THOC2Q8NI27 1593 aaKnown RBP30.15■■■□□ 2.42
LIM2-201ENST00000221973 WIZO95785 1651 aa30.14■■■□□ 2.41
LIM2-201ENST00000221973 KIF21AQ7Z4S6 1674 aa30.05■■■□□ 2.4
LIM2-201ENST00000221973 PDS5BQ9NTI5 1447 aa30.02■■■□□ 2.4
LIM2-201ENST00000221973 CADPSQ9ULU8 1353 aa30.02■■■□□ 2.4
LIM2-201ENST00000221973 RSF1Q96T23 1441 aaPredicted RBP29.91■■■□□ 2.38
LIM2-201ENST00000221973 MRC2Q9UBG0 1479 aa29.78■■■□□ 2.36
LIM2-201ENST00000221973 WDR62O43379 1518 aa29.74■■■□□ 2.35
LIM2-201ENST00000221973 TOP2AP11388 1531 aaKnown RBP29.74■■■□□ 2.35
LIM2-201ENST00000221973 CFTRP13569 1480 aa29.71■■■□□ 2.35
LIM2-201ENST00000221973 CEP164Q9UPV0 1460 aa29.67■■■□□ 2.34
LIM2-201ENST00000221973 FANCD2Q9BXW9 1451 aa29.66■■■□□ 2.34
LIM2-201ENST00000221973 URB2Q14146 1524 aaKnown RBP29.46■■■□□ 2.31
LIM2-201ENST00000221973 SUPT5HO00267 1087 aaKnown RBP29.45■■■□□ 2.31
LIM2-201ENST00000221973 CCDC88BA6NC98 1476 aa29.43■■■□□ 2.3
LIM2-201ENST00000221973 PRDM2Q13029 1718 aa29.36■■■□□ 2.29
LIM2-201ENST00000221973 TOPBP1Q92547 1522 aa29.13■■■□□ 2.25
LIM2-201ENST00000221973 ZNF608Q9ULD9 1512 aaPredicted RBP29.09■■■□□ 2.25
LIM2-201ENST00000221973 OSCARQ8IYS5 282 aa29.08■■■□□ 2.25
LIM2-201ENST00000221973 IFT140Q96RY7 1462 aa29.08■■■□□ 2.25
LIM2-201ENST00000221973 TRIM41Q8WV44 630 aa29.05■■■□□ 2.24
LIM2-201ENST00000221973 ABCC8Q09428 1581 aa29.01■■■□□ 2.23
LIM2-201ENST00000221973 DNMBPQ6XZF7 1577 aa29.01■■■□□ 2.23
LIM2-201ENST00000221973 EIF4G3O43432 1585 aaKnown RBP28.89■■■□□ 2.22
LIM2-201ENST00000221973 TARBP1Q13395 1621 aaKnown RBP28.89■■■□□ 2.22
LIM2-201ENST00000221973 POLA1P09884 1462 aaPredicted RBP28.84■■■□□ 2.21
LIM2-201ENST00000221973 AQRO60306 1485 aaKnown RBP eCLIP28.81■■■□□ 2.2
LIM2-201ENST00000221973 RAD54L2Q9Y4B4 1467 aa28.74■■■□□ 2.19
LIM2-201ENST00000221973 RIMBP3CA6NJZ7 1639 aa28.74■■■□□ 2.19
LIM2-201ENST00000221973 RIMBP3BA6NNM3 1639 aa28.74■■■□□ 2.19
LIM2-201ENST00000221973 RIMBP3Q9UFD9 1639 aa28.74■■■□□ 2.19
LIM2-201ENST00000221973 SOGA1O94964 1423 aa28.68■■■□□ 2.18
LIM2-201ENST00000221973 CUX1P39880 1505 aa28.67■■■□□ 2.18
LIM2-201ENST00000221973 CHD1O14646 1710 aa28.66■■■□□ 2.18
LIM2-201ENST00000221973 ARHGEF11O15085 1522 aa28.65■■■□□ 2.18
LIM2-201ENST00000221973 FGD5Q6ZNL6 1462 aa28.65■■■□□ 2.18
LIM2-201ENST00000221973 TDRD9Q8NDG6 1382 aaKnown RBP28.63■■■□□ 2.17
LIM2-201ENST00000221973 WDR97A6NE52 1622 aa28.53■■■□□ 2.16
LIM2-201ENST00000221973 FBLN2P98095 1184 aa28.52■■■□□ 2.16
LIM2-201ENST00000221973 SNAPC4Q5SXM2 1469 aa28.5■■■□□ 2.15
LIM2-201ENST00000221973 GRIN2BQ13224 1484 aa28.41■■■□□ 2.14
LIM2-201ENST00000221973 MAGI1Q96QZ7 1491 aaPredicted RBP28.41■■■□□ 2.14
LIM2-201ENST00000221973 CYB5RLQ6IPT4 315 aa28.41■■■□□ 2.14
LIM2-201ENST00000221973 ARAP1Q96P48 1450 aa28.4■■■□□ 2.14
LIM2-201ENST00000221973 CLASP1Q7Z460 1538 aa28.37■■■□□ 2.13
LIM2-201ENST00000221973 ABCA10Q8WWZ4 1543 aa28.34■■■□□ 2.13
LIM2-201ENST00000221973 CHMP7Q8WUX9 453 aaPredicted RBP28.33■■■□□ 2.13
LIM2-201ENST00000221973 SYNJ2O15056 1496 aa28.33■■■□□ 2.13
LIM2-201ENST00000221973 GAPVD1Q14C86 1478 aa28.33■■■□□ 2.13
LIM2-201ENST00000221973 PBRM1Q86U86 1689 aa28.3■■■□□ 2.12
LIM2-201ENST00000221973 ABCA5Q8WWZ7 1642 aa28.3■■■□□ 2.12
LIM2-201ENST00000221973 SYNJ1O43426 1573 aa28.28■■■□□ 2.12
LIM2-201ENST00000221973 TOP2BQ02880 1626 aa28.2■■■□□ 2.1
LIM2-201ENST00000221973 BIVM-ERCC5R4GMW8 1640 aa28.2■■■□□ 2.1
LIM2-201ENST00000221973 WRNQ14191 1432 aaPredicted RBP eCLIP28.19■■■□□ 2.1
LIM2-201ENST00000221973 ADAMTS12P58397 1594 aa28.07■■■□□ 2.08
LIM2-201ENST00000221973 GRIN2AQ12879 1464 aa28.06■■■□□ 2.08
LIM2-201ENST00000221973 TRHP20396 242 aaPredicted RBP28■■■□□ 2.07
LIM2-201ENST00000221973 NUP160Q12769 1436 aa28■■■□□ 2.07
LIM2-201ENST00000221973 CEP170Q5SW79 1584 aa27.99■■■□□ 2.07
LIM2-201ENST00000221973 FHAD1B1AJZ9 1412 aa27.97■■■□□ 2.07
LIM2-201ENST00000221973 ERICH3Q5RHP9 1530 aa27.97■■■□□ 2.07
LIM2-201ENST00000221973 ERCC6L2Q5T890 1561 aa27.96■■■□□ 2.07
LIM2-201ENST00000221973 SHROOM2Q13796 1616 aa27.87■■■□□ 2.05
LIM2-201ENST00000221973 CHIC1Q5VXU3 224 aa27.76■■■□□ 2.03
LIM2-201ENST00000221973 PRG4Q92954 1404 aaPredicted RBP27.68■■■□□ 2.02
LIM2-201ENST00000221973 JPH4Q96JJ6 628 aa27.68■■■□□ 2.02
LIM2-201ENST00000221973 RUSC2Q8N2Y8 1516 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms