RNA–Protein interactions for RNA: YNR007C

ATG3, Transcript of E2-like enzyme, yeast

Gene ATG3, Length 933 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG3	YNR007C	KAR2	P16474	682 aa	Known RBP	4.96	□□□□□ -1.62
ATG3	YNR007C	MSH3	P25336	1018 aa		4.96	□□□□□ -1.62
ATG3	YNR007C	PRP40	P33203	583 aa	Known RBP	4.96	□□□□□ -1.62
ATG3	YNR007C	TSA1	P34760	196 aa	Known RBP	4.96	□□□□□ -1.62
ATG3	YNR007C	PTC7	P38797	343 aa		4.96	□□□□□ -1.62
ATG3	YNR007C	TPP1	Q03796	238 aa		4.96	□□□□□ -1.62
ATG3	YNR007C	UTP5	Q04177	643 aa	Known RBP	4.96	□□□□□ -1.62
ATG3	YNR007C	BUD4	P47136	1447 aa		4.96	□□□□□ -1.62
ATG3	YNR007C	THO2	P53552	1597 aa	Known RBP	4.95	□□□□□ -1.62
ATG3	YNR007C	PHO4	P07270	312 aa	Known RBP	4.95	□□□□□ -1.62
ATG3	YNR007C	VMA4	P22203	233 aa	Known RBP	4.95	□□□□□ -1.62
ATG3	YNR007C	RET1	P22276	1149 aa	Known RBP	4.95	□□□□□ -1.62
ATG3	YNR007C	HSE1	P38753	452 aa		4.95	□□□□□ -1.62
ATG3	YNR007C	CDA2	Q06703	312 aa		4.95	□□□□□ -1.62
ATG3	YNR007C	LAP2	Q10740	671 aa		4.95	□□□□□ -1.62
ATG3	YNR007C	ATG14	P38270	344 aa		4.94	□□□□□ -1.62
ATG3	YNR007C	GTS1	P40956	396 aa		4.94	□□□□□ -1.62
ATG3	YNR007C	RSM26	P47141	266 aa		4.94	□□□□□ -1.62
ATG3	YNR007C	PEX13	P80667	386 aa		4.94	□□□□□ -1.62
ATG3	YNR007C	YLR257W	Q06146	321 aa	Known RBP	4.94	□□□□□ -1.62
ATG3	YNR007C	SQT1	P35184	431 aa		4.93	□□□□□ -1.62
ATG3	YNR007C	PPX1	P38698	397 aa		4.93	□□□□□ -1.62
ATG3	YNR007C	SSF1	P38789	453 aa	Predicted RBP	4.93	□□□□□ -1.62
ATG3	YNR007C	XKS1	P42826	600 aa		4.93	□□□□□ -1.62
ATG3	YNR007C	ULP1	Q02724	621 aa		4.93	□□□□□ -1.62
ATG3	YNR007C	DAL4	Q04895	635 aa		4.93	□□□□□ -1.62
ATG3	YNR007C	RSA3	Q05942	220 aa	Known RBP	4.93	□□□□□ -1.62
ATG3	YNR007C	HIR3	P47171	1648 aa		4.93	□□□□□ -1.62
ATG3	YNR007C	LTE1	P07866	1435 aa		4.92	□□□□□ -1.62
ATG3	YNR007C	UGA4	P32837	571 aa		4.92	□□□□□ -1.62
ATG3	YNR007C	YHL012W	P38709	493 aa		4.92	□□□□□ -1.62
ATG3	YNR007C	STM1	P39015	273 aa	Known RBP	4.92	□□□□□ -1.62
ATG3	YNR007C	HRK1	Q08732	759 aa	Known RBP	4.92	□□□□□ -1.62
ATG3	YNR007C	OXR1	Q08952	273 aa		4.92	□□□□□ -1.62
ATG3	YNR007C	MMS1	Q06211	1407 aa		4.91	□□□□□ -1.62
ATG3	YNR007C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
ATG3	YNR007C	SAM35	P14693	329 aa		4.91	□□□□□ -1.62
ATG3	YNR007C	MET4	P32389	672 aa		4.91	□□□□□ -1.62
ATG3	YNR007C	MDL2	P33311	773 aa		4.91	□□□□□ -1.62
ATG3	YNR007C	PEX28	P38848	579 aa		4.91	□□□□□ -1.62
ATG3	YNR007C	DAK2	P43550	591 aa		4.91	□□□□□ -1.62
ATG3	YNR007C	MSC6	Q08818	692 aa	Known RBP	4.91	□□□□□ -1.62
ATG3	YNR007C	PRP6	P19735	899 aa	Predicted RBP	4.9	□□□□□ -1.63
ATG3	YNR007C	YCR015C	P25616	317 aa		4.9	□□□□□ -1.63
ATG3	YNR007C	THI80	P35202	319 aa		4.9	□□□□□ -1.63
ATG3	YNR007C	NMD3	P38861	518 aa	Known RBP	4.9	□□□□□ -1.63
ATG3	YNR007C	RKM2	Q03942	479 aa		4.9	□□□□□ -1.63
ATG3	YNR007C	ESC8	Q08119	714 aa		4.9	□□□□□ -1.63
ATG3	YNR007C	CDC25	P04821	1589 aa		4.9	□□□□□ -1.63
ATG3	YNR007C	ADD66	P36040	267 aa		4.89	□□□□□ -1.63
ATG3	YNR007C	RDH54	P38086	958 aa		4.89	□□□□□ -1.63
ATG3	YNR007C	QNS1	P38795	714 aa	Known RBP	4.89	□□□□□ -1.63
ATG3	YNR007C	VPS53	P47061	822 aa		4.89	□□□□□ -1.63
ATG3	YNR007C	FOL2	P51601	243 aa	Known RBP	4.89	□□□□□ -1.63
ATG3	YNR007C	YNR063W	P53749	607 aa		4.89	□□□□□ -1.63
ATG3	YNR007C	MRPL22	P53881	309 aa		4.89	□□□□□ -1.63
ATG3	YNR007C	SRO9	P25567	434 aa	Known RBP	4.88	□□□□□ -1.63
ATG3	YNR007C	YKL222C	P35995	705 aa		4.88	□□□□□ -1.63
ATG3	YNR007C	ADI1	Q03677	179 aa		4.88	□□□□□ -1.63
ATG3	YNR007C	YDL177C	Q12257	170 aa		4.88	□□□□□ -1.63
ATG3	YNR007C	YCF1	P39109	1515 aa	Known RBP	4.87	□□□□□ -1.63
ATG3	YNR007C	RPA190	P10964	1664 aa	Known RBP	4.87	□□□□□ -1.63
ATG3	YNR007C	THI12	P42883	340 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	THI5	P43534	340 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	YJL045W	P47052	634 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	THI11	P47183	340 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	YGL140C	P53120	1219 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	YPL109C	Q02981	657 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	THI13	Q07748	340 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	TAF2	P23255	1407 aa		4.87	□□□□□ -1.63
ATG3	YNR007C	XRN1	P22147	1528 aa	Known RBP	4.87	□□□□□ -1.63
ATG3	YNR007C	AIM3	P38266	947 aa	Known RBP	4.86	□□□□□ -1.63
ATG3	YNR007C	ETP1	P38748	585 aa	Known RBP	4.86	□□□□□ -1.63
ATG3	YNR007C	RIM8	P53179	542 aa		4.86	□□□□□ -1.63
ATG3	YNR007C	TOS4	Q06266	489 aa		4.86	□□□□□ -1.63
ATG3	YNR007C	WHI5	Q12416	295 aa		4.86	□□□□□ -1.63
ATG3	YNR007C	HEM13	P11353	328 aa	Known RBP	4.85	□□□□□ -1.63
ATG3	YNR007C	SEC23	P15303	768 aa	Known RBP	4.85	□□□□□ -1.63
ATG3	YNR007C	SEC20	P28791	383 aa		4.85	□□□□□ -1.63
ATG3	YNR007C	YSC84	P32793	468 aa		4.85	□□□□□ -1.63
ATG3	YNR007C	AIM26	P32858	118 aa		4.85	□□□□□ -1.63
ATG3	YNR007C	TAF1	P46677	1066 aa		4.85	□□□□□ -1.63
ATG3	YNR007C	SNO2	P53823	222 aa		4.85	□□□□□ -1.63
ATG3	YNR007C	EST2	Q06163	884 aa		4.85	□□□□□ -1.63
ATG3	YNR007C	NBA1	Q08229	501 aa	Known RBP	4.85	□□□□□ -1.63
ATG3	YNR007C	HXK1	P04806	485 aa	Known RBP	4.84	□□□□□ -1.63
ATG3	YNR007C	FAA3	P39002	694 aa		4.84	□□□□□ -1.63
ATG3	YNR007C	GIP4	P39732	760 aa		4.84	□□□□□ -1.63
ATG3	YNR007C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
ATG3	YNR007C	RSC58	Q07979	502 aa		4.84	□□□□□ -1.63
ATG3	YNR007C	SOD2	P00447	233 aa		4.83	□□□□□ -1.64
ATG3	YNR007C	RPT1	P33299	467 aa	Known RBP	4.83	□□□□□ -1.64
ATG3	YNR007C	ENV11	P53246	860 aa		4.83	□□□□□ -1.64
ATG3	YNR007C	TAF13	P11747	167 aa		4.82	□□□□□ -1.64
ATG3	YNR007C	AFG2	P32794	780 aa		4.82	□□□□□ -1.64
ATG3	YNR007C	FLR1	P38124	548 aa		4.82	□□□□□ -1.64
ATG3	YNR007C	RPO31	P04051	1460 aa		4.81	□□□□□ -1.64
ATG3	YNR007C	COQ4	O13525	335 aa		4.81	□□□□□ -1.64
ATG3	YNR007C	RPS13	P05756	151 aa	Known RBP	4.81	□□□□□ -1.64
ATG3	YNR007C	SPS1	P08458	490 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 28.3 ms