Protein–RNA interactions for Protein: P53179

RIM8, pH-response regulator protein palF/RIM8, yeastyeast

Predictions only

Length 542 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RIM8P53179 NSR1YGR159C 1245 nt21.2■□□□□ 0.98
RIM8P53179 YML009W-BYML009W-B 477 nt21.16■□□□□ 0.98
RIM8P53179 NOP1YDL014W 984 nt20.34■□□□□ 0.85
RIM8P53179 MDJ1YFL016C 1536 nt19.25■□□□□ 0.67
RIM8P53179 YKL036CYKL036C 393 nt18.52■□□□□ 0.56
RIM8P53179 SRX1YKL086W 384 nt17.81■□□□□ 0.44
RIM8P53179 Q0297Q0297 156 nt17.74■□□□□ 0.43
RIM8P53179 YJL027CYJL027C 417 nt17.64■□□□□ 0.41
RIM8P53179 DBP2YNL112W 1641 nt16.9■□□□□ 0.3
RIM8P53179 YCR051WYCR051W 669 nt16.9■□□□□ 0.3
RIM8P53179 SCS3YGL126W 1143 nt16.77■□□□□ 0.28
RIM8P53179 YBR190WYBR190W 312 nt16.39■□□□□ 0.21
RIM8P53179 TRN1tP(UGG)A 72 nt16.33■□□□□ 0.2
RIM8P53179 SUF9tP(UGG)F 72 nt16.33■□□□□ 0.2
RIM8P53179 SUF8tP(UGG)H 72 nt16.33■□□□□ 0.2
RIM8P53179 tP(UGG)LtP(UGG)L 72 nt16.33■□□□□ 0.2
RIM8P53179 SUF7tP(UGG)M 72 nt16.33■□□□□ 0.2
RIM8P53179 tP(UGG)N1tP(UGG)N1 72 nt16.33■□□□□ 0.2
RIM8P53179 tP(UGG)N2tP(UGG)N2 72 nt16.33■□□□□ 0.2
RIM8P53179 tP(UGG)O1tP(UGG)O1 72 nt16.33■□□□□ 0.2
RIM8P53179 SUF11tP(UGG)O2 72 nt16.33■□□□□ 0.2
RIM8P53179 CCC1YLR220W 969 nt16.17■□□□□ 0.18
RIM8P53179 YOL085CYOL085C 342 nt16.09■□□□□ 0.17
RIM8P53179 RTC3YHR087W 336 nt16.03■□□□□ 0.16
RIM8P53179 PKP1YIL042C 1185 nt15.94■□□□□ 0.14
RIM8P53179 RPP1BYDL130W 321 nt15.93■□□□□ 0.14
RIM8P53179 SCJ1YMR214W 1134 nt15.71■□□□□ 0.11
RIM8P53179 RVS167YDR388W 1449 nt15.7■□□□□ 0.1
RIM8P53179 tP(UGG)O3tP(UGG)O3 72 nt15.33■□□□□ 0.04
RIM8P53179 PET122YER153C 765 nt15.31■□□□□ 0.04
RIM8P53179 PUT4YOR348C 1884 nt15.19■□□□□ 0.02
RIM8P53179 SHR5YOL110W 714 nt15.13■□□□□ 0.01
RIM8P53179 SCR1SCR1 522 nt14.97□□□□□ -0.01
RIM8P53179 URN1YPR152C 1398 nt14.92□□□□□ -0.02
RIM8P53179 SSA3YBL075C 1950 nt14.91□□□□□ -0.02
RIM8P53179 DEP1YAL013W 1218 nt14.87□□□□□ -0.03
RIM8P53179 ATS1YAL020C 1002 nt14.87□□□□□ -0.03
RIM8P53179 ARE1YCR048W 1833 nt14.84□□□□□ -0.03
RIM8P53179 RRN5YLR141W 1092 nt14.81□□□□□ -0.04
RIM8P53179 YDJ1YNL064C 1230 nt14.79□□□□□ -0.04
RIM8P53179 SAH1YER043C 1350 nt14.78□□□□□ -0.04
RIM8P53179 OPI9YLR338W 858 nt14.74□□□□□ -0.05
RIM8P53179 POA1YBR022W 534 nt14.68□□□□□ -0.06
RIM8P53179 YHR049C-AYHR049C-A 297 nt14.64□□□□□ -0.07
RIM8P53179 GAR1YHR089C 618 nt14.57□□□□□ -0.08
RIM8P53179 RPN10YHR200W 807 nt14.54□□□□□ -0.08
RIM8P53179 YER088W-BYER088W-B 147 nt14.53□□□□□ -0.08
RIM8P53179 YNL208WYNL208W 600 nt14.52□□□□□ -0.09
RIM8P53179 BSC6YOL137W 1494 nt14.43□□□□□ -0.1
RIM8P53179 RSB1YOR049C 1065 nt14.41□□□□□ -0.1
RIM8P53179 PUN1YLR414C 792 nt14.28□□□□□ -0.12
RIM8P53179 BUD23YCR047C 828 nt14.26□□□□□ -0.13
RIM8P53179 PTC2YER089C 1395 nt14.22□□□□□ -0.13
RIM8P53179 YJR018WYJR018W 363 nt14.19□□□□□ -0.14
RIM8P53179 TIR1YER011W 765 nt14.08□□□□□ -0.16
RIM8P53179 NAB2YGL122C 1578 nt14.03□□□□□ -0.16
RIM8P53179 SPT5YML010W 3192 nt14.02□□□□□ -0.16
RIM8P53179 SSA1YAL005C 1929 nt14.02□□□□□ -0.16
RIM8P53179 YJR120WYJR120W 351 nt14□□□□□ -0.17
RIM8P53179 FIS1YIL065C 468 nt13.89□□□□□ -0.19
RIM8P53179 PST2YDR032C 597 nt13.83□□□□□ -0.2
RIM8P53179 SRB2YHR041C 633 nt13.82□□□□□ -0.2
RIM8P53179 DAL1YIR027C 1383 nt13.81□□□□□ -0.2
RIM8P53179 FPR4YLR449W 1179 nt13.79□□□□□ -0.2
RIM8P53179 RPP2BYDR382W 333 nt13.77□□□□□ -0.21
RIM8P53179 PHO4YFR034C 939 nt13.71□□□□□ -0.21
RIM8P53179 INM2YDR287W 879 nt13.67□□□□□ -0.22
RIM8P53179 SSA4YER103W 1929 nt13.62□□□□□ -0.23
RIM8P53179 MEP2YNL142W 1500 nt13.55□□□□□ -0.24
RIM8P53179 YBL100CYBL100C 315 nt13.55□□□□□ -0.24
RIM8P53179 YPS1YLR120C 1710 nt13.54□□□□□ -0.24
RIM8P53179 BDH2YAL061W 1254 nt13.49□□□□□ -0.25
RIM8P53179 WWM1YFL010C 636 nt13.44□□□□□ -0.26
RIM8P53179 YDR095CYDR095C 411 nt13.4□□□□□ -0.26
RIM8P53179 YHR165W-AYHR165W-A 312 nt13.4□□□□□ -0.26
RIM8P53179 DCW1YKL046C 1350 nt13.4□□□□□ -0.26
RIM8P53179 FUN26YAL022C 1554 nt13.39□□□□□ -0.27
RIM8P53179 SHU1YHL006C 453 nt13.38□□□□□ -0.27
RIM8P53179 YAL037C-BYAL037C-B 975 nt13.3□□□□□ -0.28
RIM8P53179 TRM9YML014W 840 nt13.25□□□□□ -0.29
RIM8P53179 ALF1YNL148C 765 nt13.22□□□□□ -0.29
RIM8P53179 LSM3YLR438C-A 270 nt13.21□□□□□ -0.29
RIM8P53179 YGR021WYGR021W 873 nt13.19□□□□□ -0.3
RIM8P53179 HOM6YJR139C 1080 nt13.19□□□□□ -0.3
RIM8P53179 CCT6YDR188W 1641 nt13.17□□□□□ -0.3
RIM8P53179 PTP1YDL230W 1008 nt13.17□□□□□ -0.3
RIM8P53179 EMI2YDR516C 1503 nt13.17□□□□□ -0.3
RIM8P53179 YFL021C-AYFL021C-A 855 nt13.16□□□□□ -0.3
RIM8P53179 MNP1YGL068W 585 nt13.15□□□□□ -0.3
RIM8P53179 BDF1YLR399C 2061 nt13.14□□□□□ -0.31
RIM8P53179 CAC2YML102W 1407 nt13.13□□□□□ -0.31
RIM8P53179 RPP2AYOL039W 321 nt13.12□□□□□ -0.31
RIM8P53179 YKL097CYKL097C 411 nt13.11□□□□□ -0.31
RIM8P53179 YDL221WYDL221W 552 nt13.05□□□□□ -0.32
RIM8P53179 SIS1YNL007C 1059 nt13.05□□□□□ -0.32
RIM8P53179 SUF2tP(AGG)C 72 nt13.03□□□□□ -0.32
RIM8P53179 SUF10tP(AGG)N 72 nt13.03□□□□□ -0.32
RIM8P53179 YBR220CYBR220C 1683 nt13.02□□□□□ -0.32
RIM8P53179 YMR090WYMR090W 684 nt13□□□□□ -0.33
RIM8P53179 RKM5YLR137W 1104 nt12.99□□□□□ -0.33
Retrieved 100 of 7,029 protein–RNA pairs in 14.8 ms