Protein–RNA interactions for Protein: P38789

SSF1, Ribosome biogenesis protein SSF1, yeastyeast

Predicted RBP Predictions only

Length 453 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSF1P38789 YML009W-BYML009W-B 477 nt24.88■■□□□ 1.57
SSF1P38789 NSR1YGR159C 1245 nt24.59■■□□□ 1.53
SSF1P38789 NOP1YDL014W 984 nt24.21■■□□□ 1.47
SSF1P38789 YKL036CYKL036C 393 nt22.4■■□□□ 1.18
SSF1P38789 MDJ1YFL016C 1536 nt21.79■■□□□ 1.08
SSF1P38789 Q0297Q0297 156 nt21.16■□□□□ 0.98
SSF1P38789 SRX1YKL086W 384 nt21.11■□□□□ 0.97
SSF1P38789 YJL027CYJL027C 417 nt20.95■□□□□ 0.94
SSF1P38789 SCS3YGL126W 1143 nt20.4■□□□□ 0.86
SSF1P38789 YCR051WYCR051W 669 nt20.1■□□□□ 0.81
SSF1P38789 YOL085CYOL085C 342 nt19.38■□□□□ 0.69
SSF1P38789 DBP2YNL112W 1641 nt19.24■□□□□ 0.67
SSF1P38789 PKP1YIL042C 1185 nt19.11■□□□□ 0.65
SSF1P38789 TRN1tP(UGG)A 72 nt19.03■□□□□ 0.64
SSF1P38789 SUF9tP(UGG)F 72 nt19.03■□□□□ 0.64
SSF1P38789 SUF8tP(UGG)H 72 nt19.03■□□□□ 0.64
SSF1P38789 tP(UGG)LtP(UGG)L 72 nt19.03■□□□□ 0.64
SSF1P38789 SUF7tP(UGG)M 72 nt19.03■□□□□ 0.64
SSF1P38789 tP(UGG)N1tP(UGG)N1 72 nt19.03■□□□□ 0.64
SSF1P38789 tP(UGG)N2tP(UGG)N2 72 nt19.03■□□□□ 0.64
SSF1P38789 tP(UGG)O1tP(UGG)O1 72 nt19.03■□□□□ 0.64
SSF1P38789 SUF11tP(UGG)O2 72 nt19.03■□□□□ 0.64
SSF1P38789 RPP1BYDL130W 321 nt19.01■□□□□ 0.63
SSF1P38789 CCC1YLR220W 969 nt18.92■□□□□ 0.62
SSF1P38789 YBR190WYBR190W 312 nt18.53■□□□□ 0.56
SSF1P38789 ATS1YAL020C 1002 nt18.27■□□□□ 0.52
SSF1P38789 RVS167YDR388W 1449 nt18.22■□□□□ 0.51
SSF1P38789 RTC3YHR087W 336 nt18.21■□□□□ 0.51
SSF1P38789 PET122YER153C 765 nt18.16■□□□□ 0.5
SSF1P38789 SCJ1YMR214W 1134 nt18.15■□□□□ 0.5
SSF1P38789 tP(UGG)O3tP(UGG)O3 72 nt18.06■□□□□ 0.48
SSF1P38789 SCR1SCR1 522 nt18.03■□□□□ 0.48
SSF1P38789 RRN5YLR141W 1092 nt17.65■□□□□ 0.42
SSF1P38789 SHR5YOL110W 714 nt17.56■□□□□ 0.4
SSF1P38789 YDJ1YNL064C 1230 nt17.44■□□□□ 0.38
SSF1P38789 RSB1YOR049C 1065 nt17.35■□□□□ 0.37
SSF1P38789 YER088W-BYER088W-B 147 nt17.3■□□□□ 0.36
SSF1P38789 GAR1YHR089C 618 nt17.1■□□□□ 0.33
SSF1P38789 DEP1YAL013W 1218 nt17.08■□□□□ 0.32
SSF1P38789 URN1YPR152C 1398 nt17.03■□□□□ 0.32
SSF1P38789 PST2YDR032C 597 nt16.88■□□□□ 0.29
SSF1P38789 RPN10YHR200W 807 nt16.83■□□□□ 0.28
SSF1P38789 YNL208WYNL208W 600 nt16.79■□□□□ 0.28
SSF1P38789 OPI9YLR338W 858 nt16.73■□□□□ 0.27
SSF1P38789 PUT4YOR348C 1884 nt16.73■□□□□ 0.27
SSF1P38789 SAH1YER043C 1350 nt16.63■□□□□ 0.25
SSF1P38789 Q0182Q0182 405 nt16.6■□□□□ 0.25
SSF1P38789 TIR1YER011W 765 nt16.5■□□□□ 0.23
SSF1P38789 ARE1YCR048W 1833 nt16.46■□□□□ 0.23
SSF1P38789 YKL097CYKL097C 411 nt16.31■□□□□ 0.2
SSF1P38789 YHR049C-AYHR049C-A 297 nt16.3■□□□□ 0.2
SSF1P38789 PUN1YLR414C 792 nt16.28■□□□□ 0.2
SSF1P38789 POA1YBR022W 534 nt16.27■□□□□ 0.2
SSF1P38789 YJR018WYJR018W 363 nt16.25■□□□□ 0.19
SSF1P38789 SSA1YAL005C 1929 nt16.25■□□□□ 0.19
SSF1P38789 MOT3YMR070W 1473 nt16.21■□□□□ 0.19
SSF1P38789 SHU1YHL006C 453 nt16.19■□□□□ 0.18
SSF1P38789 PTC2YER089C 1395 nt16.07■□□□□ 0.16
SSF1P38789 RPP2BYDR382W 333 nt15.99■□□□□ 0.15
SSF1P38789 BUD23YCR047C 828 nt15.98■□□□□ 0.15
SSF1P38789 SRB2YHR041C 633 nt15.97■□□□□ 0.15
SSF1P38789 YAL037C-BYAL037C-B 975 nt15.95■□□□□ 0.14
SSF1P38789 YJR120WYJR120W 351 nt15.94■□□□□ 0.14
SSF1P38789 BSC6YOL137W 1494 nt15.88■□□□□ 0.13
SSF1P38789 NAB2YGL122C 1578 nt15.83■□□□□ 0.13
SSF1P38789 WWM1YFL010C 636 nt15.78■□□□□ 0.12
SSF1P38789 YGR021WYGR021W 873 nt15.73■□□□□ 0.11
SSF1P38789 FPR4YLR449W 1179 nt15.68■□□□□ 0.1
SSF1P38789 DAL1YIR027C 1383 nt15.65■□□□□ 0.1
SSF1P38789 INM2YDR287W 879 nt15.65■□□□□ 0.1
SSF1P38789 HOM6YJR139C 1080 nt15.64■□□□□ 0.09
SSF1P38789 BDH2YAL061W 1254 nt15.63■□□□□ 0.09
SSF1P38789 MNP1YGL068W 585 nt15.61■□□□□ 0.09
SSF1P38789 FIS1YIL065C 468 nt15.59■□□□□ 0.09
SSF1P38789 YOR139CYOR139C 393 nt15.59■□□□□ 0.09
SSF1P38789 YBL100CYBL100C 315 nt15.54■□□□□ 0.08
SSF1P38789 NPL3YDR432W 1245 nt15.52■□□□□ 0.08
SSF1P38789 YFL021C-AYFL021C-A 855 nt15.52■□□□□ 0.08
SSF1P38789 PHO4YFR034C 939 nt15.5■□□□□ 0.07
SSF1P38789 RKM5YLR137W 1104 nt15.43■□□□□ 0.06
SSF1P38789 LSM3YLR438C-A 270 nt15.43■□□□□ 0.06
SSF1P38789 SSA3YBL075C 1950 nt15.43■□□□□ 0.06
SSF1P38789 YOL037CYOL037C 354 nt15.38■□□□□ 0.05
SSF1P38789 TRM9YML014W 840 nt15.36■□□□□ 0.05
SSF1P38789 FUN26YAL022C 1554 nt15.34■□□□□ 0.05
SSF1P38789 ALF1YNL148C 765 nt15.16■□□□□ 0.02
SSF1P38789 CCT6YDR188W 1641 nt15.14■□□□□ 0.01
SSF1P38789 YPS1YLR120C 1710 nt15.13■□□□□ 0.01
SSF1P38789 SUF2tP(AGG)C 72 nt15.06■□□□□ 0
SSF1P38789 SUF10tP(AGG)N 72 nt15.06■□□□□ 0
SSF1P38789 YDR095CYDR095C 411 nt15.05■□□□□ -0
SSF1P38789 YHR165W-AYHR165W-A 312 nt15.03■□□□□ -0
SSF1P38789 YLR281CYLR281C 468 nt14.99□□□□□ -0.01
SSF1P38789 tM(CAU)CtM(CAU)C 72 nt14.98□□□□□ -0.01
SSF1P38789 IMT4tM(CAU)E 72 nt14.98□□□□□ -0.01
SSF1P38789 IMT3tM(CAU)J3 72 nt14.98□□□□□ -0.01
SSF1P38789 IMT1tM(CAU)O1 72 nt14.98□□□□□ -0.01
SSF1P38789 IMT2tM(CAU)P 72 nt14.98□□□□□ -0.01
SSF1P38789 WHI5YOR083W 888 nt14.96□□□□□ -0.01
SSF1P38789 PUS2YGL063W 1113 nt14.92□□□□□ -0.02
Retrieved 100 of 7,029 protein–RNA pairs in 15.1 ms