Protein–RNA interactions for Protein: P22276

RET1, DNA-directed RNA polymerase III subunit RPC2, yeastyeast

Known RBP Predictions only

Length 1,149 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RET1P22276 YML009W-BYML009W-B 477 nt24.81■■□□□ 1.56
RET1P22276 NOP1YDL014W 984 nt24.29■■□□□ 1.48
RET1P22276 NSR1YGR159C 1245 nt24.18■■□□□ 1.46
RET1P22276 YKL036CYKL036C 393 nt23.01■■□□□ 1.27
RET1P22276 YJL027CYJL027C 417 nt21.63■■□□□ 1.05
RET1P22276 Q0297Q0297 156 nt21.47■■□□□ 1.03
RET1P22276 SCS3YGL126W 1143 nt21.31■■□□□ 1
RET1P22276 SRX1YKL086W 384 nt21.26■□□□□ 0.99
RET1P22276 MDJ1YFL016C 1536 nt21.03■□□□□ 0.96
RET1P22276 YCR051WYCR051W 669 nt20.24■□□□□ 0.83
RET1P22276 YOL085CYOL085C 342 nt19.91■□□□□ 0.78
RET1P22276 SCJ1YMR214W 1134 nt19.83■□□□□ 0.77
RET1P22276 PKP1YIL042C 1185 nt19.57■□□□□ 0.72
RET1P22276 ATS1YAL020C 1002 nt19.29■□□□□ 0.68
RET1P22276 RPP1BYDL130W 321 nt19.27■□□□□ 0.68
RET1P22276 TRN1tP(UGG)A 72 nt18.91■□□□□ 0.62
RET1P22276 SUF9tP(UGG)F 72 nt18.91■□□□□ 0.62
RET1P22276 SUF8tP(UGG)H 72 nt18.91■□□□□ 0.62
RET1P22276 tP(UGG)LtP(UGG)L 72 nt18.91■□□□□ 0.62
RET1P22276 SUF7tP(UGG)M 72 nt18.91■□□□□ 0.62
RET1P22276 tP(UGG)N1tP(UGG)N1 72 nt18.91■□□□□ 0.62
RET1P22276 tP(UGG)N2tP(UGG)N2 72 nt18.91■□□□□ 0.62
RET1P22276 tP(UGG)O1tP(UGG)O1 72 nt18.91■□□□□ 0.62
RET1P22276 SUF11tP(UGG)O2 72 nt18.91■□□□□ 0.62
RET1P22276 DBP2YNL112W 1641 nt18.84■□□□□ 0.61
RET1P22276 CCC1YLR220W 969 nt18.79■□□□□ 0.6
RET1P22276 PET122YER153C 765 nt18.38■□□□□ 0.53
RET1P22276 SCR1SCR1 522 nt18.29■□□□□ 0.52
RET1P22276 tP(UGG)O3tP(UGG)O3 72 nt18.09■□□□□ 0.49
RET1P22276 RTC3YHR087W 336 nt18.04■□□□□ 0.48
RET1P22276 RRN5YLR141W 1092 nt17.92■□□□□ 0.46
RET1P22276 PST2YDR032C 597 nt17.74■□□□□ 0.43
RET1P22276 YBR190WYBR190W 312 nt17.74■□□□□ 0.43
RET1P22276 RVS167YDR388W 1449 nt17.73■□□□□ 0.43
RET1P22276 RSB1YOR049C 1065 nt17.69■□□□□ 0.42
RET1P22276 YER088W-BYER088W-B 147 nt17.57■□□□□ 0.4
RET1P22276 YDJ1YNL064C 1230 nt17.46■□□□□ 0.39
RET1P22276 YKL097CYKL097C 411 nt17.43■□□□□ 0.38
RET1P22276 SHR5YOL110W 714 nt17.27■□□□□ 0.36
RET1P22276 GAR1YHR089C 618 nt17.04■□□□□ 0.32
RET1P22276 SHU1YHL006C 453 nt16.83■□□□□ 0.28
RET1P22276 DEP1YAL013W 1218 nt16.68■□□□□ 0.26
RET1P22276 YOR139CYOR139C 393 nt16.59■□□□□ 0.25
RET1P22276 URN1YPR152C 1398 nt16.5■□□□□ 0.23
RET1P22276 TIR1YER011W 765 nt16.42■□□□□ 0.22
RET1P22276 YAL037C-BYAL037C-B 975 nt16.41■□□□□ 0.22
RET1P22276 YNL208WYNL208W 600 nt16.41■□□□□ 0.22
RET1P22276 NPL3YDR432W 1245 nt16.3■□□□□ 0.2
RET1P22276 RPN10YHR200W 807 nt16.28■□□□□ 0.2
RET1P22276 SSA1YAL005C 1929 nt16.15■□□□□ 0.18
RET1P22276 OPI9YLR338W 858 nt16.12■□□□□ 0.17
RET1P22276 SRB2YHR041C 633 nt16.04■□□□□ 0.16
RET1P22276 SAH1YER043C 1350 nt15.93■□□□□ 0.14
RET1P22276 tM(CAU)CtM(CAU)C 72 nt15.9■□□□□ 0.14
RET1P22276 IMT4tM(CAU)E 72 nt15.9■□□□□ 0.14
RET1P22276 IMT3tM(CAU)J3 72 nt15.9■□□□□ 0.14
RET1P22276 IMT1tM(CAU)O1 72 nt15.9■□□□□ 0.14
RET1P22276 IMT2tM(CAU)P 72 nt15.9■□□□□ 0.14
RET1P22276 MNP1YGL068W 585 nt15.86■□□□□ 0.13
RET1P22276 HOM6YJR139C 1080 nt15.84■□□□□ 0.13
RET1P22276 WWM1YFL010C 636 nt15.83■□□□□ 0.12
RET1P22276 YGR021WYGR021W 873 nt15.8■□□□□ 0.12
RET1P22276 YOL037CYOL037C 354 nt15.8■□□□□ 0.12
RET1P22276 YJR018WYJR018W 363 nt15.76■□□□□ 0.11
RET1P22276 PUT4YOR348C 1884 nt15.74■□□□□ 0.11
RET1P22276 YJR120WYJR120W 351 nt15.68■□□□□ 0.1
RET1P22276 ARE1YCR048W 1833 nt15.63■□□□□ 0.09
RET1P22276 PUN1YLR414C 792 nt15.62■□□□□ 0.09
RET1P22276 RKM5YLR137W 1104 nt15.6■□□□□ 0.09
RET1P22276 BSC6YOL137W 1494 nt15.59■□□□□ 0.09
RET1P22276 MOT3YMR070W 1473 nt15.58■□□□□ 0.08
RET1P22276 RPP2BYDR382W 333 nt15.54■□□□□ 0.08
RET1P22276 PUS2YGL063W 1113 nt15.52■□□□□ 0.08
RET1P22276 YFL021C-AYFL021C-A 855 nt15.49■□□□□ 0.07
RET1P22276 SSA3YBL075C 1950 nt15.46■□□□□ 0.07
RET1P22276 PTC2YER089C 1395 nt15.4■□□□□ 0.06
RET1P22276 YLR281CYLR281C 468 nt15.4■□□□□ 0.06
RET1P22276 YHR049C-AYHR049C-A 297 nt15.39■□□□□ 0.05
RET1P22276 BDH2YAL061W 1254 nt15.35■□□□□ 0.05
RET1P22276 POA1YBR022W 534 nt15.32■□□□□ 0.04
RET1P22276 WHI5YOR083W 888 nt15.27■□□□□ 0.04
RET1P22276 LSM3YLR438C-A 270 nt15.24■□□□□ 0.03
RET1P22276 MRPL8YJL063C 717 nt15.23■□□□□ 0.03
RET1P22276 FMP45YDL222C 930 nt15.11■□□□□ 0.01
RET1P22276 INM2YDR287W 879 nt15.11■□□□□ 0.01
RET1P22276 BUD23YCR047C 828 nt15.1■□□□□ 0.01
RET1P22276 YPR011CYPR011C 981 nt15.1■□□□□ 0.01
RET1P22276 NAB2YGL122C 1578 nt15.09■□□□□ 0.01
RET1P22276 YBL100CYBL100C 315 nt15.06■□□□□ 0
RET1P22276 YCH1YGR203W 447 nt15.02■□□□□ -0
RET1P22276 FPR4YLR449W 1179 nt15.02■□□□□ -0
RET1P22276 UBX6YJL048C 1191 nt15.01□□□□□ -0.01
RET1P22276 DAL1YIR027C 1383 nt14.99□□□□□ -0.01
RET1P22276 DSK2YMR276W 1122 nt14.99□□□□□ -0.01
RET1P22276 TRM9YML014W 840 nt14.98□□□□□ -0.01
RET1P22276 ADO1YJR105W 1023 nt14.97□□□□□ -0.01
RET1P22276 YLR236CYLR236C 324 nt14.96□□□□□ -0.01
RET1P22276 FIS1YIL065C 468 nt14.94□□□□□ -0.02
RET1P22276 FUN26YAL022C 1554 nt14.92□□□□□ -0.02
RET1P22276 IMP2'YIL154C 1041 nt14.89□□□□□ -0.03
Retrieved 100 of 7,029 protein–RNA pairs in 30.5 ms