Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 YML009W-BYML009W-B 477 nt21.97■■□□□ 1.11
UBP3Q01477 NSR1YGR159C 1245 nt21.9■■□□□ 1.1 RIP-Chip
UBP3Q01477 NOP1YDL014W 984 nt21.28■■□□□ 1
UBP3Q01477 YKL036CYKL036C 393 nt19.6■□□□□ 0.73
UBP3Q01477 MDJ1YFL016C 1536 nt19.57■□□□□ 0.72
UBP3Q01477 Q0297Q0297 156 nt18.66■□□□□ 0.58
UBP3Q01477 SRX1YKL086W 384 nt18.64■□□□□ 0.57
UBP3Q01477 YJL027CYJL027C 417 nt18.29■□□□□ 0.52
UBP3Q01477 SCS3YGL126W 1143 nt17.84■□□□□ 0.45
UBP3Q01477 YCR051WYCR051W 669 nt17.69■□□□□ 0.42
UBP3Q01477 DBP2YNL112W 1641 nt17.32■□□□□ 0.36
UBP3Q01477 YOL085CYOL085C 342 nt17.04■□□□□ 0.32
UBP3Q01477 TRN1tP(UGG)A 72 nt16.9■□□□□ 0.3
UBP3Q01477 SUF9tP(UGG)F 72 nt16.9■□□□□ 0.3
UBP3Q01477 SUF8tP(UGG)H 72 nt16.9■□□□□ 0.3
UBP3Q01477 tP(UGG)LtP(UGG)L 72 nt16.9■□□□□ 0.3
UBP3Q01477 SUF7tP(UGG)M 72 nt16.9■□□□□ 0.3
UBP3Q01477 tP(UGG)N1tP(UGG)N1 72 nt16.9■□□□□ 0.3
UBP3Q01477 tP(UGG)N2tP(UGG)N2 72 nt16.9■□□□□ 0.3
UBP3Q01477 tP(UGG)O1tP(UGG)O1 72 nt16.9■□□□□ 0.3
UBP3Q01477 SUF11tP(UGG)O2 72 nt16.9■□□□□ 0.3
UBP3Q01477 PKP1YIL042C 1185 nt16.81■□□□□ 0.28
UBP3Q01477 CCC1YLR220W 969 nt16.77■□□□□ 0.28 RIP-Chip
UBP3Q01477 RPP1BYDL130W 321 nt16.74■□□□□ 0.27 RIP-Chip
UBP3Q01477 YBR190WYBR190W 312 nt16.66■□□□□ 0.26
UBP3Q01477 RTC3YHR087W 336 nt16.29■□□□□ 0.2
UBP3Q01477 SCJ1YMR214W 1134 nt16.15■□□□□ 0.18 RIP-Chip
UBP3Q01477 RVS167YDR388W 1449 nt16.12■□□□□ 0.17
UBP3Q01477 PET122YER153C 765 nt16.04■□□□□ 0.16
UBP3Q01477 tP(UGG)O3tP(UGG)O3 72 nt15.98■□□□□ 0.15
UBP3Q01477 ATS1YAL020C 1002 nt15.94■□□□□ 0.14
UBP3Q01477 SCR1SCR1 522 nt15.75■□□□□ 0.11
UBP3Q01477 SHR5YOL110W 714 nt15.59■□□□□ 0.09
UBP3Q01477 RRN5YLR141W 1092 nt15.58■□□□□ 0.08
UBP3Q01477 YDJ1YNL064C 1230 nt15.44■□□□□ 0.06 RIP-Chip
UBP3Q01477 Q0182Q0182 405 nt15.38■□□□□ 0.05
UBP3Q01477 YER088W-BYER088W-B 147 nt15.27■□□□□ 0.04
UBP3Q01477 DEP1YAL013W 1218 nt15.25■□□□□ 0.03
UBP3Q01477 PUT4YOR348C 1884 nt15.24■□□□□ 0.03
UBP3Q01477 URN1YPR152C 1398 nt15.24■□□□□ 0.03
UBP3Q01477 RSB1YOR049C 1065 nt15.18■□□□□ 0.02
UBP3Q01477 GAR1YHR089C 618 nt15.13■□□□□ 0.01 RIP-Chip
UBP3Q01477 SSA3YBL075C 1950 nt15.1■□□□□ 0.01
UBP3Q01477 OPI9YLR338W 858 nt15.03■□□□□ -0
UBP3Q01477 SAH1YER043C 1350 nt14.99□□□□□ -0.01
UBP3Q01477 ARE1YCR048W 1833 nt14.94□□□□□ -0.02
UBP3Q01477 YNL208WYNL208W 600 nt14.93□□□□□ -0.02 RIP-Chip
UBP3Q01477 RPN10YHR200W 807 nt14.9□□□□□ -0.02
UBP3Q01477 MOT3YMR070W 1473 nt14.82□□□□□ -0.04
UBP3Q01477 PST2YDR032C 597 nt14.81□□□□□ -0.04
UBP3Q01477 POA1YBR022W 534 nt14.76□□□□□ -0.05 RIP-Chip
UBP3Q01477 YHR049C-AYHR049C-A 297 nt14.71□□□□□ -0.05
UBP3Q01477 TIR1YER011W 765 nt14.62□□□□□ -0.07
UBP3Q01477 PUN1YLR414C 792 nt14.54□□□□□ -0.08 RIP-Chip
UBP3Q01477 YJR018WYJR018W 363 nt14.52□□□□□ -0.09
UBP3Q01477 SSA1YAL005C 1929 nt14.51□□□□□ -0.09 RIP-Chip
UBP3Q01477 PTC2YER089C 1395 nt14.44□□□□□ -0.1
UBP3Q01477 BSC6YOL137W 1494 nt14.44□□□□□ -0.1
UBP3Q01477 BUD23YCR047C 828 nt14.37□□□□□ -0.11
UBP3Q01477 YJR120WYJR120W 351 nt14.37□□□□□ -0.11
UBP3Q01477 SRB2YHR041C 633 nt14.34□□□□□ -0.11
UBP3Q01477 SHU1YHL006C 453 nt14.23□□□□□ -0.13
UBP3Q01477 NAB2YGL122C 1578 nt14.22□□□□□ -0.13
UBP3Q01477 RPP2BYDR382W 333 nt14.13□□□□□ -0.15
UBP3Q01477 YKL097CYKL097C 411 nt14.1□□□□□ -0.15
UBP3Q01477 YAL037C-BYAL037C-B 975 nt14.07□□□□□ -0.16
UBP3Q01477 FIS1YIL065C 468 nt14.05□□□□□ -0.16
UBP3Q01477 DAL1YIR027C 1383 nt14.02□□□□□ -0.17
UBP3Q01477 WWM1YFL010C 636 nt14.01□□□□□ -0.17
UBP3Q01477 FPR4YLR449W 1179 nt14□□□□□ -0.17
UBP3Q01477 INM2YDR287W 879 nt13.99□□□□□ -0.17
UBP3Q01477 PHO4YFR034C 939 nt13.9□□□□□ -0.18
UBP3Q01477 BDH2YAL061W 1254 nt13.9□□□□□ -0.18
UBP3Q01477 SPT5YML010W 3192 nt13.88□□□□□ -0.19
UBP3Q01477 YBL100CYBL100C 315 nt13.85□□□□□ -0.19
UBP3Q01477 HOM6YJR139C 1080 nt13.82□□□□□ -0.2
UBP3Q01477 YGR021WYGR021W 873 nt13.79□□□□□ -0.2
UBP3Q01477 MNP1YGL068W 585 nt13.76□□□□□ -0.21
UBP3Q01477 FUN26YAL022C 1554 nt13.71□□□□□ -0.21 RIP-Chip
UBP3Q01477 YFL021C-AYFL021C-A 855 nt13.71□□□□□ -0.21
UBP3Q01477 LSM3YLR438C-A 270 nt13.7□□□□□ -0.22
UBP3Q01477 YPS1YLR120C 1710 nt13.67□□□□□ -0.22 RIP-Chip
UBP3Q01477 TRM9YML014W 840 nt13.64□□□□□ -0.23
UBP3Q01477 YOR139CYOR139C 393 nt13.64□□□□□ -0.23
UBP3Q01477 RKM5YLR137W 1104 nt13.61□□□□□ -0.23
UBP3Q01477 YDR095CYDR095C 411 nt13.57□□□□□ -0.24
UBP3Q01477 MEP2YNL142W 1500 nt13.55□□□□□ -0.24
UBP3Q01477 CCT6YDR188W 1641 nt13.52□□□□□ -0.25 RIP-Chip
UBP3Q01477 YHR165W-AYHR165W-A 312 nt13.49□□□□□ -0.25
UBP3Q01477 ALF1YNL148C 765 nt13.46□□□□□ -0.25
UBP3Q01477 NPL3YDR432W 1245 nt13.44□□□□□ -0.26
UBP3Q01477 YOL037CYOL037C 354 nt13.41□□□□□ -0.26
UBP3Q01477 DCW1YKL046C 1350 nt13.4□□□□□ -0.26 RIP-Chip
UBP3Q01477 PTP1YDL230W 1008 nt13.35□□□□□ -0.27
UBP3Q01477 SUF2tP(AGG)C 72 nt13.34□□□□□ -0.27
UBP3Q01477 SUF10tP(AGG)N 72 nt13.34□□□□□ -0.27
UBP3Q01477 SIS1YNL007C 1059 nt13.34□□□□□ -0.27
UBP3Q01477 SSA4YER103W 1929 nt13.34□□□□□ -0.27
UBP3Q01477 RPP2AYOL039W 321 nt13.31□□□□□ -0.28
UBP3Q01477 CAC2YML102W 1407 nt13.26□□□□□ -0.29
Retrieved 100 of 7,029 protein–RNA pairs in 16.8 ms