RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W RGP1P16664 663 aa15.94■□□□□ 0.14
DEP1YAL013W CSC1Q06538 782 aa15.94■□□□□ 0.14
DEP1YAL013W VIP1Q06685 1146 aaKnown RBP15.94■□□□□ 0.14
DEP1YAL013W SUB2Q07478 446 aaKnown RBP15.94■□□□□ 0.14
DEP1YAL013W TIP41Q12199 356 aa15.94■□□□□ 0.14
DEP1YAL013W GPA1P08539 472 aa15.93■□□□□ 0.14
DEP1YAL013W NPR3P38742 1146 aa15.93■□□□□ 0.14
DEP1YAL013W TYW1Q08960 810 aaKnown RBP15.93■□□□□ 0.14
DEP1YAL013W RPL22AP05749 121 aaKnown RBP15.92■□□□□ 0.14
DEP1YAL013W PEX21P50091 288 aa15.92■□□□□ 0.14
DEP1YAL013W LSB1P53281 241 aa15.92■□□□□ 0.14
DEP1YAL013W UTP4Q06679 776 aaKnown RBP15.92■□□□□ 0.14
DEP1YAL013W YOR296WQ08748 1289 aa15.92■□□□□ 0.14
DEP1YAL013W NBL1Q3E7Y6 73 aa15.92■□□□□ 0.14
DEP1YAL013W PNT1P38969 423 aa15.91■□□□□ 0.14
DEP1YAL013W STT3P39007 718 aaKnown RBP15.91■□□□□ 0.14
DEP1YAL013W YER130CP39959 443 aa15.91■□□□□ 0.14
DEP1YAL013W TPM2P40414 161 aa15.91■□□□□ 0.14
DEP1YAL013W YIL089WP40500 205 aa15.91■□□□□ 0.14
DEP1YAL013W LYS14P40971 790 aa15.91■□□□□ 0.14
DEP1YAL013W MMR1Q06324 491 aa15.91■□□□□ 0.14
DEP1YAL013W GIN4Q12263 1142 aa15.91■□□□□ 0.14
DEP1YAL013W TRS33Q99394 268 aa15.91■□□□□ 0.14
DEP1YAL013W THR4P16120 514 aaKnown RBP15.9■□□□□ 0.14
DEP1YAL013W RPL8AP17076 256 aaKnown RBP15.9■□□□□ 0.14
DEP1YAL013W YKT6P36015 200 aaKnown RBP15.9■□□□□ 0.14
DEP1YAL013W RSC1P53236 928 aa15.9■□□□□ 0.14
DEP1YAL013W EIS1Q05050 843 aaKnown RBP15.9■□□□□ 0.14
DEP1YAL013W BMH1P29311 267 aaKnown RBP15.89■□□□□ 0.13
DEP1YAL013W DAK2P43550 591 aa15.89■□□□□ 0.13
DEP1YAL013W RRT6P53117 311 aaPredicted RBP15.89■□□□□ 0.13
DEP1YAL013W YML037CQ03703 340 aa15.89■□□□□ 0.13
DEP1YAL013W SSA4P22202 642 aaKnown RBP15.88■□□□□ 0.13
DEP1YAL013W PAN5P38787 379 aa15.88■□□□□ 0.13
DEP1YAL013W YGR153WP48238 217 aa15.88■□□□□ 0.13
DEP1YAL013W RTC4P53850 401 aa15.88■□□□□ 0.13
DEP1YAL013W LCD1Q04377 747 aa15.88■□□□□ 0.13
DEP1YAL013W SMD2Q06217 110 aaKnown RBP15.88■□□□□ 0.13
DEP1YAL013W FBP1P09201 348 aa15.87■□□□□ 0.13
DEP1YAL013W OCT1P35999 772 aa15.87■□□□□ 0.13
DEP1YAL013W TRS120Q04183 1289 aa15.87■□□□□ 0.13
DEP1YAL013W SLK19Q08581 821 aaKnown RBP15.87■□□□□ 0.13
DEP1YAL013W RAD18P10862 487 aa15.86■□□□□ 0.13
DEP1YAL013W PER1P25625 357 aa15.86■□□□□ 0.13
DEP1YAL013W SAS3P34218 831 aa15.86■□□□□ 0.13
DEP1YAL013W PHO88P38264 188 aaPredicted RBP15.86■□□□□ 0.13
DEP1YAL013W NDT80P38830 627 aa15.86■□□□□ 0.13
DEP1YAL013W CIT3P43635 486 aa15.86■□□□□ 0.13
DEP1YAL013W BNI5P53890 448 aaKnown RBP15.86■□□□□ 0.13
DEP1YAL013W FKS1P38631 1876 aaKnown RBP15.86■□□□□ 0.13
DEP1YAL013W ATG32P40458 529 aa15.85■□□□□ 0.13
DEP1YAL013W YJL007CP47080 104 aa15.85■□□□□ 0.13
DEP1YAL013W FMS1P50264 508 aa15.85■□□□□ 0.13
DEP1YAL013W DSE4P53753 1117 aa15.85■□□□□ 0.13
DEP1YAL013W TAF13P11747 167 aa15.84■□□□□ 0.13
DEP1YAL013W YDJ1P25491 409 aaKnown RBP15.84■□□□□ 0.13
DEP1YAL013W SRO9P25567 434 aaKnown RBP15.84■□□□□ 0.13
DEP1YAL013W UGA4P32837 571 aa15.84■□□□□ 0.13
DEP1YAL013W THI6P41835 540 aa15.84■□□□□ 0.13
DEP1YAL013W PEX29Q03370 554 aa15.84■□□□□ 0.13
DEP1YAL013W ATE1P16639 503 aa15.83■□□□□ 0.12
DEP1YAL013W SRP40P32583 406 aaPredicted RBP15.83■□□□□ 0.12
DEP1YAL013W TGL1P34163 548 aa15.83■□□□□ 0.12
DEP1YAL013W SGD1Q06132 899 aa15.83■□□□□ 0.12
DEP1YAL013W UBX5Q06682 500 aa15.83■□□□□ 0.12
DEP1YAL013W HIS4P00815 799 aaKnown RBP15.82■□□□□ 0.12
DEP1YAL013W PHR1P05066 565 aaKnown RBP RIP-Chip data15.82■□□□□ 0.12not detected
DEP1YAL013W GSY2P27472 705 aa15.82■□□□□ 0.12
DEP1YAL013W TMA64Q04600 565 aaKnown RBP15.82■□□□□ 0.12
DEP1YAL013W CSM3Q04659 317 aa15.82■□□□□ 0.12
DEP1YAL013W HIR1P32479 840 aa15.81■□□□□ 0.12
DEP1YAL013W PCS60P38137 543 aaKnown RBP RIP-Chip data15.81■□□□□ 0.12not detected
DEP1YAL013W SUL1P38359 859 aa15.81■□□□□ 0.12
DEP1YAL013W RRM3P38766 723 aa15.81■□□□□ 0.12
DEP1YAL013W FOB1O13329 566 aa15.8■□□□□ 0.12
DEP1YAL013W PWP2P25635 923 aaKnown RBP15.8■□□□□ 0.12
DEP1YAL013W ALD6P54115 500 aaKnown RBP15.8■□□□□ 0.12
DEP1YAL013W SSL2Q00578 843 aa15.8■□□□□ 0.12
DEP1YAL013W VMS1Q04311 632 aaKnown RBP15.8■□□□□ 0.12
DEP1YAL013W YLR326WQ06170 240 aaKnown RBP15.8■□□□□ 0.12
DEP1YAL013W GAA1P39012 614 aa15.79■□□□□ 0.12
DEP1YAL013W VAB2P40003 282 aa15.79■□□□□ 0.12
DEP1YAL013W FYV10P40492 516 aa15.79■□□□□ 0.12
DEP1YAL013W NET1P47035 1189 aa15.79■□□□□ 0.12
DEP1YAL013W AIM33Q04516 312 aa15.79■□□□□ 0.12
DEP1YAL013W SPH1Q06160 661 aa15.79■□□□□ 0.12
DEP1YAL013W GUD1Q07729 489 aa15.79■□□□□ 0.12
DEP1YAL013W MRPL10P36520 322 aa15.78■□□□□ 0.12
DEP1YAL013W SDA1P53313 767 aaKnown RBP15.78■□□□□ 0.12
DEP1YAL013W YGR273CP53329 174 aa15.78■□□□□ 0.12
DEP1YAL013W ORC4P54791 529 aa15.78■□□□□ 0.12
DEP1YAL013W BUL2Q03758 920 aaKnown RBP15.78■□□□□ 0.12
DEP1YAL013W TOM1Q03280 3268 aa15.77■□□□□ 0.12
DEP1YAL013W TUF1P02992 437 aaKnown RBP15.77■□□□□ 0.12
DEP1YAL013W UBA2P52488 636 aa15.77■□□□□ 0.12
DEP1YAL013W LIF1P53150 421 aa15.77■□□□□ 0.12
DEP1YAL013W OYE2Q03558 400 aaKnown RBP15.77■□□□□ 0.12
DEP1YAL013W OXR1Q08952 273 aa15.77■□□□□ 0.12
DEP1YAL013W ARP6Q12509 438 aa15.77■□□□□ 0.12
DEP1YAL013W CKA2P19454 339 aa15.76■□□□□ 0.11
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms