RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeast

Gene NME1, Length 340 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NME1	NME1	TIM54	P47045	478 aa		11.55	□□□□□ -0.56
NME1	NME1	RKM2	Q03942	479 aa		11.55	□□□□□ -0.56
NME1	NME1	YMR074C	Q04773	145 aa		11.55	□□□□□ -0.56
NME1	NME1	NHA1	Q99271	985 aa		11.55	□□□□□ -0.56
NME1	NME1	HUL5	P53119	910 aa		11.54	□□□□□ -0.56
NME1	NME1	ELG1	Q12050	791 aa		11.54	□□□□□ -0.56
NME1	NME1	SYP1	P25623	870 aa	Known RBP	11.53	□□□□□ -0.56
NME1	NME1	RNH70	P53331	553 aa		11.53	□□□□□ -0.56
NME1	NME1	TY4B-P	A0A0B7P3V8	1104 aa		11.52	□□□□□ -0.57
NME1	NME1	SBA1	P28707	216 aa	Known RBP	11.52	□□□□□ -0.57
NME1	NME1	BRN1	P38170	754 aa		11.52	□□□□□ -0.57
NME1	NME1	HPF1	Q05164	967 aa		11.52	□□□□□ -0.57
NME1	NME1	TY4A-H	Q6Q5P6	413 aa		11.52	□□□□□ -0.57
NME1	NME1	PPG1	P32838	368 aa		11.51	□□□□□ -0.57
NME1	NME1	SHE9	Q04172	456 aa		11.51	□□□□□ -0.57
NME1	NME1	YLR225C	Q05948	407 aa	Known RBP	11.51	□□□□□ -0.57
NME1	NME1	CIT2	P08679	460 aa		11.5	□□□□□ -0.57
NME1	NME1	ABD1	P32783	436 aa	Predicted RBP	11.5	□□□□□ -0.57
NME1	NME1	MRP8	P35719	219 aa		11.5	□□□□□ -0.57
NME1	NME1	MAE1	P36013	669 aa	Known RBP	11.5	□□□□□ -0.57
NME1	NME1	PBP2	P38151	413 aa	Known RBP RIP-Chip data	11.5	□□□□□ -0.57	not detected
NME1	NME1	CNN1	P43618	361 aa		11.5	□□□□□ -0.57
NME1	NME1	YNR063W	P53749	607 aa		11.5	□□□□□ -0.57
NME1	NME1	RAT1	Q02792	1006 aa	Known RBP	11.5	□□□□□ -0.57
NME1	NME1	TIF35	Q04067	274 aa	Known RBP	11.5	□□□□□ -0.57
NME1	NME1	AVO1	Q08236	1176 aa		11.5	□□□□□ -0.57
NME1	NME1	LAP2	Q10740	671 aa		11.5	□□□□□ -0.57
NME1	NME1	INO1	P11986	533 aa		11.49	□□□□□ -0.57
NME1	NME1	SEA4	P38164	1038 aa		11.49	□□□□□ -0.57
NME1	NME1	SNF7	P39929	240 aa	Known RBP	11.49	□□□□□ -0.57
NME1	NME1	SPO74	P45819	413 aa		11.49	□□□□□ -0.57
NME1	NME1	YGR035C	P53222	116 aa		11.49	□□□□□ -0.57
NME1	NME1	ESC2	Q06340	456 aa		11.49	□□□□□ -0.57
NME1	NME1	SPO75	Q07798	868 aa		11.49	□□□□□ -0.57
NME1	NME1	ERS1	P17261	260 aa		11.48	□□□□□ -0.57
NME1	NME1	DBP5	P20449	482 aa	Known RBP	11.48	□□□□□ -0.57
NME1	NME1	MOT2	P34909	587 aa	Known RBP	11.48	□□□□□ -0.57
NME1	NME1	YAR028W	P39548	234 aa		11.48	□□□□□ -0.57
NME1	NME1	DSE4	P53753	1117 aa		11.48	□□□□□ -0.57
NME1	NME1	VBA5	P36172	582 aa		11.47	□□□□□ -0.57
NME1	NME1	YBR184W	P38299	523 aa		11.47	□□□□□ -0.57
NME1	NME1	ALG6	Q12001	544 aa	Known RBP	11.47	□□□□□ -0.57
NME1	NME1	RKM4	Q12504	494 aa		11.47	□□□□□ -0.57
NME1	NME1	MCM7	P38132	845 aa		11.46	□□□□□ -0.57
NME1	NME1	HSE1	P38753	452 aa		11.46	□□□□□ -0.57
NME1	NME1	IRR1	P40541	1150 aa		11.46	□□□□□ -0.57
NME1	NME1	DOS2	P54858	310 aa		11.46	□□□□□ -0.57
NME1	NME1	OSH2	Q12451	1283 aa		11.46	□□□□□ -0.57
NME1	NME1	YKL107W	P34251	309 aa		11.45	□□□□□ -0.58
NME1	NME1	BUD6	P41697	788 aa		11.45	□□□□□ -0.58
NME1	NME1	AOS1	Q06624	347 aa		11.45	□□□□□ -0.58
NME1	NME1	AFG2	P32794	780 aa		11.44	□□□□□ -0.58
NME1	NME1	STE5	P32917	917 aa		11.44	□□□□□ -0.58
NME1	NME1	ALG3	P38179	458 aa		11.44	□□□□□ -0.58
NME1	NME1	HNT2	P49775	206 aa		11.44	□□□□□ -0.58
NME1	NME1	PTC5	Q12511	572 aa		11.44	□□□□□ -0.58
NME1	NME1	PIN4	P34217	668 aa	Known RBP RIP-Chip data	11.43	□□□□□ -0.58	not detected
NME1	NME1	FLC1	Q08967	793 aa		11.43	□□□□□ -0.58
NME1	NME1	YOR223W	Q12015	292 aa		11.43	□□□□□ -0.58
NME1	NME1	PBY1	P38254	753 aa		11.42	□□□□□ -0.58
NME1	NME1	VPS53	P47061	822 aa		11.42	□□□□□ -0.58
NME1	NME1	YGR045C	P53229	120 aa		11.42	□□□□□ -0.58
NME1	NME1	YGR125W	P53273	1036 aa		11.42	□□□□□ -0.58
NME1	NME1	PUF4	P25339	888 aa	Known RBP RIP-Chip data	11.41	□□□□□ -0.58	not detected
NME1	NME1	RRP14	P36080	434 aa	Known RBP	11.41	□□□□□ -0.58
NME1	NME1	SPC42	P36094	363 aa		11.41	□□□□□ -0.58
NME1	NME1	RGD1	P38339	666 aa		11.41	□□□□□ -0.58
NME1	NME1	YGL176C	P46945	554 aa		11.41	□□□□□ -0.58
NME1	NME1	KIP3	P53086	805 aa	Known RBP	11.41	□□□□□ -0.58
NME1	NME1	YHR020W	P38708	688 aa	Known RBP	11.4	□□□□□ -0.58
NME1	NME1	RRM3	P38766	723 aa		11.4	□□□□□ -0.58
NME1	NME1	FMP25	Q08023	583 aa		11.4	□□□□□ -0.58
NME1	NME1	HSP60	P19882	572 aa	Known RBP	11.39	□□□□□ -0.59
NME1	NME1	RPL8B	P29453	256 aa	Known RBP	11.39	□□□□□ -0.59
NME1	NME1	ERP6	P53198	216 aa		11.39	□□□□□ -0.59
NME1	NME1	ALG12	P53730	551 aa		11.39	□□□□□ -0.59
NME1	NME1	ELA1	P53861	379 aa	Predicted RBP	11.39	□□□□□ -0.59
NME1	NME1	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	11.39	□□□□□ -0.59	not detected
NME1	NME1	DOT1	Q04089	582 aa	Known RBP	11.39	□□□□□ -0.59
NME1	NME1	SBP1	P10080	294 aa	Known RBP	11.38	□□□□□ -0.59
NME1	NME1	MLS1	P30952	554 aa		11.38	□□□□□ -0.59
NME1	NME1	BOI2	P39969	1040 aa		11.38	□□□□□ -0.59
NME1	NME1	CHZ1	P40019	153 aa	Predicted RBP	11.38	□□□□□ -0.59
NME1	NME1	MPH1	P40562	993 aa		11.38	□□□□□ -0.59
NME1	NME1	YNR014W	P53719	212 aa		11.38	□□□□□ -0.59
NME1	NME1	YPL066W	Q12194	479 aa		11.37	□□□□□ -0.59
NME1	NME1	GAL11	P19659	1081 aa		11.36	□□□□□ -0.59
NME1	NME1	NFS1	P25374	497 aa		11.36	□□□□□ -0.59
NME1	NME1	RSP5	P39940	809 aa	Known RBP	11.36	□□□□□ -0.59
NME1	NME1	NUP82	P40368	713 aa		11.36	□□□□□ -0.59
NME1	NME1	EAF1	Q06337	982 aa		11.36	□□□□□ -0.59
NME1	NME1	PPM2	Q08282	695 aa		11.36	□□□□□ -0.59
NME1	NME1	AI1	P03875	834 aa		11.35	□□□□□ -0.59
NME1	NME1	PRP9	P19736	530 aa	Known RBP	11.35	□□□□□ -0.59
NME1	NME1	GGA2	P38817	585 aa	Known RBP	11.35	□□□□□ -0.59
NME1	NME1	RSA3	Q05942	220 aa	Known RBP	11.35	□□□□□ -0.59
NME1	NME1	GNT1	Q12096	491 aa		11.35	□□□□□ -0.59
NME1	NME1	CIT1	P00890	479 aa		11.34	□□□□□ -0.59
NME1	NME1	ARE1	P25628	610 aa		11.34	□□□□□ -0.59
NME1	NME1	QNS1	P38795	714 aa	Known RBP	11.34	□□□□□ -0.59

Retrieved 100 of 5,963 RNA–protein pairs in 563.7 ms