Protein–RNA interactions for Protein: P25339

PUF4, Pumilio homology domain family member 4, yeastyeast

Known RBP RIP-Chip data

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PUF4P25339 NSR1YGR159C 1245 nt21.06■□□□□ 0.96 RIP-Chip
PUF4P25339 YML009W-BYML009W-B 477 nt21.02■□□□□ 0.96
PUF4P25339 NOP1YDL014W 984 nt20.23■□□□□ 0.83 RIP-Chip
PUF4P25339 MDJ1YFL016C 1536 nt19.08■□□□□ 0.64
PUF4P25339 YKL036CYKL036C 393 nt18.48■□□□□ 0.55
PUF4P25339 SRX1YKL086W 384 nt17.73■□□□□ 0.43
PUF4P25339 Q0297Q0297 156 nt17.68■□□□□ 0.42
PUF4P25339 YJL027CYJL027C 417 nt17.49■□□□□ 0.39
PUF4P25339 YCR051WYCR051W 669 nt16.82■□□□□ 0.28 RIP-Chip
PUF4P25339 DBP2YNL112W 1641 nt16.78■□□□□ 0.28
PUF4P25339 SCS3YGL126W 1143 nt16.74■□□□□ 0.27
PUF4P25339 YBR190WYBR190W 312 nt16.24■□□□□ 0.19
PUF4P25339 TRN1tP(UGG)A 72 nt16.23■□□□□ 0.19
PUF4P25339 SUF9tP(UGG)F 72 nt16.23■□□□□ 0.19
PUF4P25339 SUF8tP(UGG)H 72 nt16.23■□□□□ 0.19
PUF4P25339 tP(UGG)LtP(UGG)L 72 nt16.23■□□□□ 0.19
PUF4P25339 SUF7tP(UGG)M 72 nt16.23■□□□□ 0.19
PUF4P25339 tP(UGG)N1tP(UGG)N1 72 nt16.23■□□□□ 0.19
PUF4P25339 tP(UGG)N2tP(UGG)N2 72 nt16.23■□□□□ 0.19
PUF4P25339 tP(UGG)O1tP(UGG)O1 72 nt16.23■□□□□ 0.19
PUF4P25339 SUF11tP(UGG)O2 72 nt16.23■□□□□ 0.19
PUF4P25339 CCC1YLR220W 969 nt16.07■□□□□ 0.16
PUF4P25339 YOL085CYOL085C 342 nt16.06■□□□□ 0.16
PUF4P25339 PKP1YIL042C 1185 nt15.89■□□□□ 0.13
PUF4P25339 RPP1BYDL130W 321 nt15.87■□□□□ 0.13
PUF4P25339 RTC3YHR087W 336 nt15.87■□□□□ 0.13
PUF4P25339 SCJ1YMR214W 1134 nt15.67■□□□□ 0.1
PUF4P25339 RVS167YDR388W 1449 nt15.56■□□□□ 0.08 RIP-Chip
PUF4P25339 tP(UGG)O3tP(UGG)O3 72 nt15.26■□□□□ 0.03
PUF4P25339 PET122YER153C 765 nt15.25■□□□□ 0.03
PUF4P25339 ATS1YAL020C 1002 nt15.11■□□□□ 0.01
PUF4P25339 PUT4YOR348C 1884 nt15.03■□□□□ -0
PUF4P25339 SHR5YOL110W 714 nt15.01□□□□□ -0.01
PUF4P25339 SCR1SCR1 522 nt14.89□□□□□ -0.03
PUF4P25339 URN1YPR152C 1398 nt14.79□□□□□ -0.04
PUF4P25339 RRN5YLR141W 1092 nt14.77□□□□□ -0.05 RIP-Chip
PUF4P25339 DEP1YAL013W 1218 nt14.75□□□□□ -0.05
PUF4P25339 YDJ1YNL064C 1230 nt14.73□□□□□ -0.05 RIP-Chip
PUF4P25339 ARE1YCR048W 1833 nt14.69□□□□□ -0.06
PUF4P25339 SSA3YBL075C 1950 nt14.65□□□□□ -0.06
PUF4P25339 SAH1YER043C 1350 nt14.64□□□□□ -0.07
PUF4P25339 OPI9YLR338W 858 nt14.61□□□□□ -0.07
PUF4P25339 POA1YBR022W 534 nt14.53□□□□□ -0.08
PUF4P25339 GAR1YHR089C 618 nt14.49□□□□□ -0.09 RIP-Chip
PUF4P25339 YER088W-BYER088W-B 147 nt14.48□□□□□ -0.09
PUF4P25339 YHR049C-AYHR049C-A 297 nt14.47□□□□□ -0.09
PUF4P25339 YNL208WYNL208W 600 nt14.41□□□□□ -0.1
PUF4P25339 RPN10YHR200W 807 nt14.4□□□□□ -0.1
PUF4P25339 RSB1YOR049C 1065 nt14.36□□□□□ -0.11
PUF4P25339 BSC6YOL137W 1494 nt14.27□□□□□ -0.12 RIP-Chip
PUF4P25339 PUN1YLR414C 792 nt14.14□□□□□ -0.15
PUF4P25339 BUD23YCR047C 828 nt14.1□□□□□ -0.15 RIP-Chip
PUF4P25339 PTC2YER089C 1395 nt14.08□□□□□ -0.16
PUF4P25339 YJR018WYJR018W 363 nt14.07□□□□□ -0.16
PUF4P25339 Q0182Q0182 405 nt14.03□□□□□ -0.16
PUF4P25339 TIR1YER011W 765 nt14□□□□□ -0.17
PUF4P25339 SSA1YAL005C 1929 nt13.94□□□□□ -0.18
PUF4P25339 YJR120WYJR120W 351 nt13.93□□□□□ -0.18
PUF4P25339 NAB2YGL122C 1578 nt13.88□□□□□ -0.19
PUF4P25339 PST2YDR032C 597 nt13.85□□□□□ -0.19
PUF4P25339 SPT5YML010W 3192 nt13.84□□□□□ -0.19
PUF4P25339 MOT3YMR070W 1473 nt13.8□□□□□ -0.2
PUF4P25339 SRB2YHR041C 633 nt13.77□□□□□ -0.21
PUF4P25339 FIS1YIL065C 468 nt13.76□□□□□ -0.21
PUF4P25339 YKL097CYKL097C 411 nt13.74□□□□□ -0.21
PUF4P25339 DAL1YIR027C 1383 nt13.67□□□□□ -0.22
PUF4P25339 FPR4YLR449W 1179 nt13.65□□□□□ -0.22
PUF4P25339 RPP2BYDR382W 333 nt13.64□□□□□ -0.23
PUF4P25339 PHO4YFR034C 939 nt13.57□□□□□ -0.24
PUF4P25339 INM2YDR287W 879 nt13.55□□□□□ -0.24
PUF4P25339 YBL100CYBL100C 315 nt13.43□□□□□ -0.26
PUF4P25339 SSA4YER103W 1929 nt13.42□□□□□ -0.26
PUF4P25339 MEP2YNL142W 1500 nt13.4□□□□□ -0.26
PUF4P25339 YPS1YLR120C 1710 nt13.4□□□□□ -0.26
PUF4P25339 WWM1YFL010C 636 nt13.38□□□□□ -0.27
PUF4P25339 BDH2YAL061W 1254 nt13.38□□□□□ -0.27
PUF4P25339 SHU1YHL006C 453 nt13.37□□□□□ -0.27
PUF4P25339 YAL037C-BYAL037C-B 975 nt13.28□□□□□ -0.28
PUF4P25339 FUN26YAL022C 1554 nt13.28□□□□□ -0.28
PUF4P25339 YDR095CYDR095C 411 nt13.27□□□□□ -0.29
PUF4P25339 DCW1YKL046C 1350 nt13.25□□□□□ -0.29
PUF4P25339 YHR165W-AYHR165W-A 312 nt13.24□□□□□ -0.29
PUF4P25339 TRM9YML014W 840 nt13.15□□□□□ -0.3
PUF4P25339 HOM6YJR139C 1080 nt13.14□□□□□ -0.31
PUF4P25339 LSM3YLR438C-A 270 nt13.13□□□□□ -0.31
PUF4P25339 YGR021WYGR021W 873 nt13.12□□□□□ -0.31
PUF4P25339 YFL021C-AYFL021C-A 855 nt13.1□□□□□ -0.31
PUF4P25339 MNP1YGL068W 585 nt13.1□□□□□ -0.31
PUF4P25339 ALF1YNL148C 765 nt13.08□□□□□ -0.32
PUF4P25339 PTP1YDL230W 1008 nt13.07□□□□□ -0.32
PUF4P25339 CCT6YDR188W 1641 nt13.06□□□□□ -0.32
PUF4P25339 CAC2YML102W 1407 nt13.02□□□□□ -0.33
PUF4P25339 EMI2YDR516C 1503 nt13.02□□□□□ -0.33
PUF4P25339 RPP2AYOL039W 321 nt13□□□□□ -0.33
PUF4P25339 BDF1YLR399C 2061 nt12.94□□□□□ -0.34
PUF4P25339 RKM5YLR137W 1104 nt12.94□□□□□ -0.34 RIP-Chip
PUF4P25339 SIS1YNL007C 1059 nt12.94□□□□□ -0.34
PUF4P25339 YOR139CYOR139C 393 nt12.93□□□□□ -0.34
PUF4P25339 YDL221WYDL221W 552 nt12.9□□□□□ -0.34
PUF4P25339 SUF2tP(AGG)C 72 nt12.9□□□□□ -0.34 RIP-Chip
Retrieved 100 of 7,029 protein–RNA pairs in 31.7 ms