RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeastyeast

Gene NME1, Length 340 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NME1NME1 DRS1P32892 752 aaKnown RBP25.2■■□□□ 1.62
NME1NME1 MTC1P47018 478 aaKnown RBP24.49■■□□□ 1.51
NME1NME1 BFR2Q06631 534 aaKnown RBP22.07■■□□□ 1.12
NME1NME1 DIP2Q12220 943 aaPredicted RBP21.24■□□□□ 0.99
NME1NME1 TFA1P36100 482 aa21.12■□□□□ 0.97
NME1NME1 AVT3P36062 692 aa21.09■□□□□ 0.97
NME1NME1 RSE1Q04693 1361 aaKnown RBP19.92■□□□□ 0.78
NME1NME1 ISW2Q08773 1120 aa19.84■□□□□ 0.77
NME1NME1 RPG1P38249 964 aaKnown RBP19.52■□□□□ 0.72
NME1NME1 FAP1P53971 965 aa19.49■□□□□ 0.71
NME1NME1 PRI1P10363 409 aa19.33■□□□□ 0.68
NME1NME1 RPL17AP05740 184 aaKnown RBP19.12■□□□□ 0.65
NME1NME1 RPL17BP46990 184 aaKnown RBP19.12■□□□□ 0.65
NME1NME1 AAD16Q02895 342 aa18.94■□□□□ 0.62
NME1NME1 REB1P21538 810 aa18.88■□□□□ 0.61
NME1NME1 RQC2Q12532 1038 aaKnown RBP18.64■□□□□ 0.57
NME1NME1 SPT21P35209 758 aa18.41■□□□□ 0.54
NME1NME1 TSR3Q12094 313 aaKnown RBP18.4■□□□□ 0.54
NME1NME1 RIM101P33400 625 aa18.3■□□□□ 0.52
NME1NME1 PRY3P47033 881 aa18.18■□□□□ 0.5
NME1NME1 PTP3P40048 928 aa18.07■□□□□ 0.48
NME1NME1 SSP1P38871 571 aa17.78■□□□□ 0.44
NME1NME1 MRPL32P25348 183 aa17.73■□□□□ 0.43
NME1NME1 OXP1P28273 1286 aa17.73■□□□□ 0.43
NME1NME1 YKR023WP36119 530 aaKnown RBP17.67■□□□□ 0.42
NME1NME1 DMA1P38823 416 aa17.62■□□□□ 0.41
NME1NME1 YAH1Q12184 172 aaKnown RBP17.6■□□□□ 0.41
NME1NME1 YIL055CP40523 627 aaKnown RBP17.58■□□□□ 0.4
NME1NME1 ARP8Q12386 881 aaKnown RBP RIP-Chip data17.5■□□□□ 0.39not detected
NME1NME1 YLR271WQ06152 274 aa17.35■□□□□ 0.37
NME1NME1 TFC8Q12308 588 aa17.35■□□□□ 0.37
NME1NME1 HOP09932 586 aa17.34■□□□□ 0.37
NME1NME1 RSM7P47150 247 aa17.26■□□□□ 0.35
NME1NME1 HAA1Q12753 694 aaKnown RBP17.2■□□□□ 0.34
NME1NME1 DCD1P06773 312 aa17.18■□□□□ 0.34
NME1NME1 CDC27P38042 758 aa17.16■□□□□ 0.34
NME1NME1 YCK3P39962 524 aa17.1■□□□□ 0.33
NME1NME1 MGA2P40578 1113 aa17.09■□□□□ 0.33
NME1NME1 AI2P03876 854 aa16.91■□□□□ 0.3
NME1NME1 BCH2P36122 765 aa16.86■□□□□ 0.29
NME1NME1 CST9Q06032 482 aa16.85■□□□□ 0.29
NME1NME1 PSD2P53037 1138 aaKnown RBP16.83■□□□□ 0.28
NME1NME1 BBC1P47068 1157 aa16.82■□□□□ 0.28
NME1NME1 EPS1P40557 701 aa16.64■□□□□ 0.25
NME1NME1 SCY1P53009 804 aa16.51■□□□□ 0.23
NME1NME1 BDF1P35817 686 aa16.49■□□□□ 0.23
NME1NME1 SAS10Q12136 610 aaPredicted RBP16.48■□□□□ 0.23
NME1NME1 UBP10P53874 792 aaPredicted RBP16.45■□□□□ 0.22
NME1NME1 MRM1P25270 412 aa16.43■□□□□ 0.22
NME1NME1 MAP2P38174 421 aaKnown RBP16.39■□□□□ 0.21
NME1NME1 YGL015CP33199 130 aa16.34■□□□□ 0.21
NME1NME1 RAM2P29703 316 aa16.32■□□□□ 0.2
NME1NME1 LEO1P38439 464 aa16.29■□□□□ 0.2
NME1NME1 RTG3P38165 486 aa16.25■□□□□ 0.19
NME1NME1 RCR1P38212 213 aa16.22■□□□□ 0.19
NME1NME1 SLX5P32828 619 aaKnown RBP16.18■□□□□ 0.18
NME1NME1 LEU3P08638 886 aa16.17■□□□□ 0.18
NME1NME1 SET1P38827 1080 aaKnown RBP16.14■□□□□ 0.17
NME1NME1 MAK11P20484 414 aaKnown RBP16.06■□□□□ 0.16
NME1NME1 TAF7Q05021 590 aa16.03■□□□□ 0.16
NME1NME1 IFH1P39520 1085 aa15.99■□□□□ 0.15
NME1NME1 VPS29P38759 282 aa15.97■□□□□ 0.15
NME1NME1 YPR148CQ06523 435 aa15.95■□□□□ 0.14
NME1NME1 VPS70P47161 811 aa15.92■□□□□ 0.14
NME1NME1 CKB1P43639 278 aa15.91■□□□□ 0.14
NME1NME1 YMR1P47147 688 aaKnown RBP RIP-Chip data15.88■□□□□ 0.13not detected
NME1NME1 SPB4P25808 606 aaPredicted RBP15.83■□□□□ 0.12
NME1NME1 COQ8P27697 501 aa15.82■□□□□ 0.12
NME1NME1 TIF4632P39936 914 aaKnown RBP15.8■□□□□ 0.12
NME1NME1 STS1P38637 319 aa15.74■□□□□ 0.11
NME1NME1 DBP1P24784 617 aaKnown RBP15.73■□□□□ 0.11
NME1NME1 MIF2P35201 549 aa15.72■□□□□ 0.11
NME1NME1 NOP53Q12080 455 aaKnown RBP15.72■□□□□ 0.11
NME1NME1 RPN1P38764 993 aaKnown RBP15.71■□□□□ 0.11
NME1NME1 YFR006WP43590 535 aa15.7■□□□□ 0.1
NME1NME1 YOR238WQ08634 303 aa15.7■□□□□ 0.1
NME1NME1 NSR1P27476 414 aaKnown RBP RIP-Chip data15.64■□□□□ 0.09not detected
NME1NME1 TGL3P40308 642 aa15.63■□□□□ 0.09
NME1NME1 EDS1P38073 919 aa15.6■□□□□ 0.09
NME1NME1 YAP5P40574 245 aa15.6■□□□□ 0.09
NME1NME1 PBS2P08018 668 aa15.57■□□□□ 0.08
NME1NME1 DSF2P38213 736 aa15.55■□□□□ 0.08
NME1NME1 PIB1Q06651 286 aa15.5■□□□□ 0.07
NME1NME1 PTC3P34221 468 aaKnown RBP15.49■□□□□ 0.07
NME1NME1 REF2P42073 533 aaPredicted RBP15.47■□□□□ 0.07
NME1NME1 VMA1P17255 1071 aaKnown RBP15.39■□□□□ 0.05
NME1NME1 MAM3Q12296 706 aa15.38■□□□□ 0.05
NME1NME1 YNR021WP53723 404 aaKnown RBP15.32■□□□□ 0.04
NME1NME1 MAK21Q12176 1025 aaKnown RBP15.32■□□□□ 0.04
NME1NME1 ATH1P48016 1211 aa15.29■□□□□ 0.04
NME1NME1 IES2P40154 320 aa15.28■□□□□ 0.04
NME1NME1 GRE2Q12068 342 aaKnown RBP15.28■□□□□ 0.04
NME1NME1 DMA2P53924 522 aa15.24■□□□□ 0.03
NME1NME1 COX6P00427 148 aa15.23■□□□□ 0.03
NME1NME1 GUT1P32190 709 aa15.22■□□□□ 0.03
NME1NME1 GTT3P39996 337 aa15.21■□□□□ 0.03
NME1NME1 SAM3Q08986 587 aa15.21■□□□□ 0.03
NME1NME1 MST1P07236 462 aa15.2■□□□□ 0.02
NME1NME1 GLC3P32775 704 aa15.16■□□□□ 0.02
NME1NME1 VHR2P40041 505 aa15.16■□□□□ 0.02
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms