RNA–Protein interactions for RNA: snR54

snR54, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR54, Length 86 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR54	snR54	MCM5	P29496	775 aa	Known RBP	4.76	□□□□□ -1.65
snR54	snR54	GCV1	P48015	400 aa		4.76	□□□□□ -1.65
snR54	snR54	SAM37	P50110	327 aa		4.76	□□□□□ -1.65
snR54	snR54	DOT1	Q04089	582 aa	Known RBP	4.76	□□□□□ -1.65
snR54	snR54	PMT7	Q06644	662 aa		4.76	□□□□□ -1.65
snR54	snR54	GIC2	Q06648	383 aa		4.76	□□□□□ -1.65
snR54	snR54	ALG6	Q12001	544 aa	Known RBP	4.76	□□□□□ -1.65
snR54	snR54	TY1A-GR1	Q12085	440 aa		4.76	□□□□□ -1.65
snR54	snR54	WHI5	Q12416	295 aa		4.76	□□□□□ -1.65
snR54	snR54	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.76	□□□□□ -1.65
snR54	snR54	TY1A-OL	Q92392	440 aa	Known RBP	4.76	□□□□□ -1.65
snR54	snR54	CYC7	P00045	113 aa		4.75	□□□□□ -1.65
snR54	snR54	LIP5	P32875	414 aa		4.75	□□□□□ -1.65
snR54	snR54	UTP22	P53254	1237 aa	Predicted RBP	4.75	□□□□□ -1.65
snR54	snR54	MET4	P32389	672 aa		4.74	□□□□□ -1.65
snR54	snR54	UGA4	P32837	571 aa		4.74	□□□□□ -1.65
snR54	snR54	WHI3	P34761	661 aa	Known RBP	4.74	□□□□□ -1.65
snR54	snR54	CIC1	P38779	376 aa	Known RBP	4.74	□□□□□ -1.65
snR54	snR54	SPO74	P45819	413 aa		4.74	□□□□□ -1.65
snR54	snR54	CTH1	P47976	325 aa		4.74	□□□□□ -1.65
snR54	snR54	PHO4	P07270	312 aa	Known RBP	4.73	□□□□□ -1.65
snR54	snR54	SEA4	P38164	1038 aa		4.73	□□□□□ -1.65
snR54	snR54	REI1	P38344	393 aa	Predicted RBP	4.73	□□□□□ -1.65
snR54	snR54	PPX1	P38698	397 aa		4.73	□□□□□ -1.65
snR54	snR54	THI12	P42883	340 aa		4.73	□□□□□ -1.65
snR54	snR54	THI5	P43534	340 aa		4.73	□□□□□ -1.65
snR54	snR54	THI11	P47183	340 aa		4.73	□□□□□ -1.65
snR54	snR54	SDH1	Q00711	640 aa		4.73	□□□□□ -1.65
snR54	snR54	MEC3	Q02574	474 aa		4.73	□□□□□ -1.65
snR54	snR54	TOS4	Q06266	489 aa		4.73	□□□□□ -1.65
snR54	snR54	THI13	Q07748	340 aa		4.73	□□□□□ -1.65
snR54	snR54	MSB1	P21339	1137 aa	Known RBP	4.72	□□□□□ -1.65
snR54	snR54	STM1	P39015	273 aa	Known RBP	4.72	□□□□□ -1.65
snR54	snR54	RVS167	P39743	482 aa	Known RBP	4.72	□□□□□ -1.65
snR54	snR54	YCS4	Q06156	1176 aa		4.72	□□□□□ -1.65
snR54	snR54	MAG2	Q06436	670 aa	Known RBP	4.72	□□□□□ -1.65
snR54	snR54	BRE4	Q07660	1125 aa		4.72	□□□□□ -1.65
snR54	snR54	MSC6	Q08818	692 aa	Known RBP	4.72	□□□□□ -1.65
snR54	snR54	YLL054C	Q12244	843 aa		4.72	□□□□□ -1.65
snR54	snR54	GCD1	P09032	578 aa	Predicted RBP	4.71	□□□□□ -1.66
snR54	snR54	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	not detected
snR54	snR54	EXO5	P38289	585 aa		4.71	□□□□□ -1.66
snR54	snR54	IPL1	P38991	367 aa		4.71	□□□□□ -1.66
snR54	snR54	MMM1	P41800	426 aa		4.71	□□□□□ -1.66
snR54	snR54	DAK2	P43550	591 aa		4.71	□□□□□ -1.66
snR54	snR54	PRP40	P33203	583 aa	Known RBP	4.7	□□□□□ -1.66
snR54	snR54	MSH4	P40965	878 aa	Predicted RBP	4.7	□□□□□ -1.66
snR54	snR54	SLS1	P42900	643 aa		4.7	□□□□□ -1.66
snR54	snR54	ELA1	P53861	379 aa	Predicted RBP	4.7	□□□□□ -1.66
snR54	snR54	EAR1	Q03212	550 aa		4.7	□□□□□ -1.66
snR54	snR54	DAL4	Q04895	635 aa		4.7	□□□□□ -1.66
snR54	snR54	GCD6	P32501	712 aa	Known RBP	4.69	□□□□□ -1.66
snR54	snR54	CIT3	P43635	486 aa		4.69	□□□□□ -1.66
snR54	snR54	YGR045C	P53229	120 aa		4.69	□□□□□ -1.66
snR54	snR54	RPS4A	P0CX35	261 aa	Known RBP	4.68	□□□□□ -1.66
snR54	snR54	RPS4B	P0CX36	261 aa	Known RBP	4.68	□□□□□ -1.66
snR54	snR54	VPS35	P34110	944 aa		4.68	□□□□□ -1.66
snR54	snR54	YKL077W	P36081	392 aa		4.68	□□□□□ -1.66
snR54	snR54	NEM1	P38757	446 aa		4.68	□□□□□ -1.66
snR54	snR54	PEX13	P80667	386 aa		4.68	□□□□□ -1.66
snR54	snR54	SEN54	Q02825	467 aa	Predicted RBP	4.68	□□□□□ -1.66
snR54	snR54	MSH3	P25336	1018 aa		4.67	□□□□□ -1.66
snR54	snR54	RPT1	P33299	467 aa	Known RBP	4.67	□□□□□ -1.66
snR54	snR54	FAA3	P39002	694 aa		4.67	□□□□□ -1.66
snR54	snR54	RSM26	P47141	266 aa		4.67	□□□□□ -1.66
snR54	snR54	ALT1	P52893	592 aa		4.67	□□□□□ -1.66
snR54	snR54	ULP1	Q02724	621 aa		4.67	□□□□□ -1.66
snR54	snR54	NFS1	P25374	497 aa		4.66	□□□□□ -1.66
snR54	snR54	SHU2	P38957	223 aa		4.66	□□□□□ -1.66
snR54	snR54	OYE3	P41816	400 aa	Predicted RBP	4.66	□□□□□ -1.66
snR54	snR54	RCM1	P53972	490 aa		4.66	□□□□□ -1.66
snR54	snR54	NOG1	Q02892	647 aa	Known RBP	4.66	□□□□□ -1.66
snR54	snR54	AVO1	Q08236	1176 aa		4.66	□□□□□ -1.66
snR54	snR54	SEC20	P28791	383 aa		4.65	□□□□□ -1.67
snR54	snR54	SMY2	P32909	740 aa	Known RBP	4.65	□□□□□ -1.67
snR54	snR54	ARL1	P38116	183 aa	Known RBP	4.65	□□□□□ -1.67
snR54	snR54	NMD3	P38861	518 aa	Known RBP	4.65	□□□□□ -1.67
snR54	snR54	AVT1	P47082	602 aa		4.65	□□□□□ -1.67
snR54	snR54	SQT1	P35184	431 aa		4.64	□□□□□ -1.67
snR54	snR54	XKS1	P42826	600 aa		4.64	□□□□□ -1.67
snR54	snR54	UTP5	Q04177	643 aa	Known RBP	4.64	□□□□□ -1.67
snR54	snR54	OXR1	Q08952	273 aa		4.64	□□□□□ -1.67
snR54	snR54	KAR2	P16474	682 aa	Known RBP	4.63	□□□□□ -1.67
snR54	snR54	PEX28	P38848	579 aa		4.63	□□□□□ -1.67
snR54	snR54	YAR028W	P39548	234 aa		4.63	□□□□□ -1.67
snR54	snR54	MTR4	P47047	1073 aa	Known RBP	4.63	□□□□□ -1.67
snR54	snR54	YNR063W	P53749	607 aa		4.63	□□□□□ -1.67
snR54	snR54	YOR059C	Q08448	450 aa	Known RBP	4.63	□□□□□ -1.67
snR54	snR54	YVC1	Q12324	675 aa		4.63	□□□□□ -1.67
snR54	snR54	HEM13	P11353	328 aa	Known RBP	4.62	□□□□□ -1.67
snR54	snR54	LRG1	P35688	1017 aa		4.62	□□□□□ -1.67
snR54	snR54	NNK1	P36003	928 aa		4.62	□□□□□ -1.67
snR54	snR54	YPL109C	Q02981	657 aa		4.62	□□□□□ -1.67
snR54	snR54	ADI1	Q03677	179 aa		4.62	□□□□□ -1.67
snR54	snR54	NSI1	Q12457	570 aa		4.62	□□□□□ -1.67
snR54	snR54	HXK1	P04806	485 aa	Known RBP	4.61	□□□□□ -1.67
snR54	snR54	POL12	P38121	705 aa	Predicted RBP	4.61	□□□□□ -1.67
snR54	snR54	YGL140C	P53120	1219 aa		4.61	□□□□□ -1.67
snR54	snR54	YML020W	Q03722	664 aa		4.61	□□□□□ -1.67
snR54	snR54	TPP1	Q03796	238 aa		4.61	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 27 ms