Protein–RNA interactions for Protein: P32588

PUB1, Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1, yeastyeast

Known RBP RIP-Chip data

Length 453 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PUB1P32588 NSR1YGR159C 1245 nt18.15■□□□□ 0.5
PUB1P32588 YML009W-BYML009W-B 477 nt17.95■□□□□ 0.46
PUB1P32588 NOP1YDL014W 984 nt17.3■□□□□ 0.36
PUB1P32588 MDJ1YFL016C 1536 nt16.47■□□□□ 0.23
PUB1P32588 YKL036CYKL036C 393 nt15.6■□□□□ 0.09
PUB1P32588 YJL027CYJL027C 417 nt15.18■□□□□ 0.02
PUB1P32588 SRX1YKL086W 384 nt15.09■□□□□ 0.01
PUB1P32588 Q0297Q0297 156 nt14.99□□□□□ -0.01
PUB1P32588 DBP2YNL112W 1641 nt14.4□□□□□ -0.1
PUB1P32588 SCS3YGL126W 1143 nt14.33□□□□□ -0.12
PUB1P32588 YCR051WYCR051W 669 nt14.3□□□□□ -0.12
PUB1P32588 YBR190WYBR190W 312 nt14.15□□□□□ -0.14
PUB1P32588 TRN1tP(UGG)A 72 nt13.87□□□□□ -0.19
PUB1P32588 SUF9tP(UGG)F 72 nt13.87□□□□□ -0.19
PUB1P32588 SUF8tP(UGG)H 72 nt13.87□□□□□ -0.19
PUB1P32588 tP(UGG)LtP(UGG)L 72 nt13.87□□□□□ -0.19
PUB1P32588 SUF7tP(UGG)M 72 nt13.87□□□□□ -0.19
PUB1P32588 tP(UGG)N1tP(UGG)N1 72 nt13.87□□□□□ -0.19
PUB1P32588 tP(UGG)N2tP(UGG)N2 72 nt13.87□□□□□ -0.19
PUB1P32588 tP(UGG)O1tP(UGG)O1 72 nt13.87□□□□□ -0.19
PUB1P32588 SUF11tP(UGG)O2 72 nt13.87□□□□□ -0.19
PUB1P32588 RTC3YHR087W 336 nt13.83□□□□□ -0.2
PUB1P32588 CCC1YLR220W 969 nt13.73□□□□□ -0.21 RIP-Chip
PUB1P32588 YOL085CYOL085C 342 nt13.52□□□□□ -0.25
PUB1P32588 RVS167YDR388W 1449 nt13.52□□□□□ -0.25 RIP-Chip
PUB1P32588 RPP1BYDL130W 321 nt13.45□□□□□ -0.26
PUB1P32588 PKP1YIL042C 1185 nt13.34□□□□□ -0.27
PUB1P32588 SCJ1YMR214W 1134 nt13.32□□□□□ -0.28
PUB1P32588 SSA3YBL075C 1950 nt13.16□□□□□ -0.3
PUB1P32588 PUT4YOR348C 1884 nt13.13□□□□□ -0.31
PUB1P32588 tP(UGG)O3tP(UGG)O3 72 nt12.99□□□□□ -0.33
PUB1P32588 SHR5YOL110W 714 nt12.93□□□□□ -0.34 RIP-Chip
PUB1P32588 PET122YER153C 765 nt12.9□□□□□ -0.34
PUB1P32588 ATS1YAL020C 1002 nt12.86□□□□□ -0.35
PUB1P32588 URN1YPR152C 1398 nt12.8□□□□□ -0.36
PUB1P32588 ARE1YCR048W 1833 nt12.78□□□□□ -0.36 RIP-Chip
PUB1P32588 SAH1YER043C 1350 nt12.69□□□□□ -0.38
PUB1P32588 POA1YBR022W 534 nt12.69□□□□□ -0.38
PUB1P32588 OPI9YLR338W 858 nt12.68□□□□□ -0.38
PUB1P32588 SCR1SCR1 522 nt12.68□□□□□ -0.38
PUB1P32588 DEP1YAL013W 1218 nt12.67□□□□□ -0.38
PUB1P32588 YHR049C-AYHR049C-A 297 nt12.63□□□□□ -0.39
PUB1P32588 YDJ1YNL064C 1230 nt12.57□□□□□ -0.4
PUB1P32588 RPN10YHR200W 807 nt12.55□□□□□ -0.4
PUB1P32588 BSC6YOL137W 1494 nt12.49□□□□□ -0.41 RIP-Chip
PUB1P32588 RRN5YLR141W 1092 nt12.47□□□□□ -0.41 RIP-Chip
PUB1P32588 YNL208WYNL208W 600 nt12.45□□□□□ -0.42
PUB1P32588 GAR1YHR089C 618 nt12.35□□□□□ -0.43
PUB1P32588 PUN1YLR414C 792 nt12.33□□□□□ -0.44 RIP-Chip
PUB1P32588 BUD23YCR047C 828 nt12.31□□□□□ -0.44
PUB1P32588 PTC2YER089C 1395 nt12.23□□□□□ -0.45
PUB1P32588 YER088W-BYER088W-B 147 nt12.22□□□□□ -0.45
PUB1P32588 YJR018WYJR018W 363 nt12.18□□□□□ -0.46
PUB1P32588 SPT5YML010W 3192 nt12.15□□□□□ -0.46
PUB1P32588 NAB2YGL122C 1578 nt12.13□□□□□ -0.47
PUB1P32588 RSB1YOR049C 1065 nt12.13□□□□□ -0.47
PUB1P32588 TIR1YER011W 765 nt11.96□□□□□ -0.49 RIP-Chip
PUB1P32588 SSA4YER103W 1929 nt11.93□□□□□ -0.5
PUB1P32588 FIS1YIL065C 468 nt11.92□□□□□ -0.5
PUB1P32588 DAL1YIR027C 1383 nt11.91□□□□□ -0.5
PUB1P32588 SSA1YAL005C 1929 nt11.88□□□□□ -0.51
PUB1P32588 PST2YDR032C 597 nt11.88□□□□□ -0.51
PUB1P32588 YJR120WYJR120W 351 nt11.88□□□□□ -0.51
PUB1P32588 FPR4YLR449W 1179 nt11.87□□□□□ -0.51
PUB1P32588 RPP2BYDR382W 333 nt11.86□□□□□ -0.51
PUB1P32588 INM2YDR287W 879 nt11.8□□□□□ -0.52
PUB1P32588 PHO4YFR034C 939 nt11.79□□□□□ -0.52
PUB1P32588 MEP2YNL142W 1500 nt11.76□□□□□ -0.53 RIP-Chip
PUB1P32588 YPS1YLR120C 1710 nt11.69□□□□□ -0.54 RIP-Chip
PUB1P32588 YBL100CYBL100C 315 nt11.64□□□□□ -0.55
PUB1P32588 YHR165W-AYHR165W-A 312 nt11.6□□□□□ -0.55
PUB1P32588 SRB2YHR041C 633 nt11.58□□□□□ -0.56 RIP-Chip
PUB1P32588 YDR095CYDR095C 411 nt11.56□□□□□ -0.56
PUB1P32588 DCW1YKL046C 1350 nt11.55□□□□□ -0.56
PUB1P32588 BDH2YAL061W 1254 nt11.54□□□□□ -0.56
PUB1P32588 YKL097CYKL097C 411 nt11.5□□□□□ -0.57 RIP-Chip
PUB1P32588 BDF1YLR399C 2061 nt11.48□□□□□ -0.57
PUB1P32588 FUN26YAL022C 1554 nt11.47□□□□□ -0.57
PUB1P32588 EMI2YDR516C 1503 nt11.42□□□□□ -0.58
PUB1P32588 ALF1YNL148C 765 nt11.42□□□□□ -0.58
PUB1P32588 YMR090WYMR090W 684 nt11.4□□□□□ -0.58
PUB1P32588 TRM9YML014W 840 nt11.39□□□□□ -0.59
PUB1P32588 SHU1YHL006C 453 nt11.37□□□□□ -0.59
PUB1P32588 WWM1YFL010C 636 nt11.36□□□□□ -0.59
PUB1P32588 TAT1YBR069C 1860 nt11.34□□□□□ -0.59 RIP-Chip
PUB1P32588 RPP2AYOL039W 321 nt11.34□□□□□ -0.59 RIP-Chip
PUB1P32588 YBR220CYBR220C 1683 nt11.31□□□□□ -0.6
PUB1P32588 YDL221WYDL221W 552 nt11.31□□□□□ -0.6
PUB1P32588 LSM3YLR438C-A 270 nt11.31□□□□□ -0.6
PUB1P32588 PTP1YDL230W 1008 nt11.3□□□□□ -0.6
PUB1P32588 CCT6YDR188W 1641 nt11.29□□□□□ -0.6
PUB1P32588 CAC2YML102W 1407 nt11.27□□□□□ -0.6
PUB1P32588 SUF2tP(AGG)C 72 nt11.25□□□□□ -0.61
PUB1P32588 SUF10tP(AGG)N 72 nt11.25□□□□□ -0.61
PUB1P32588 SDH1YKL148C 1923 nt11.23□□□□□ -0.61 RIP-Chip
PUB1P32588 YGR139WYGR139W 339 nt11.22□□□□□ -0.61
PUB1P32588 SIS1YNL007C 1059 nt11.22□□□□□ -0.61 RIP-Chip
PUB1P32588 YGR021WYGR021W 873 nt11.21□□□□□ -0.61
PUB1P32588 YFL021C-AYFL021C-A 855 nt11.2□□□□□ -0.62
PUB1P32588 YAL037C-BYAL037C-B 975 nt11.16□□□□□ -0.62
Retrieved 100 of 7,029 protein–RNA pairs in 13.7 ms