RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W HTA1P04911 132 aaKnown RBP5.26□□□□□ -1.57
SSH4YKL124W HTA2P04912 132 aa5.26□□□□□ -1.57
SSH4YKL124W TOA1P32773 286 aa5.26□□□□□ -1.57
SSH4YKL124W VAB2P40003 282 aa5.26□□□□□ -1.57
SSH4YKL124W LYS14P40971 790 aa5.26□□□□□ -1.57
SSH4YKL124W YNL035CP53962 389 aaKnown RBP5.26□□□□□ -1.57
SSH4YKL124W SGD1Q06132 899 aa5.26□□□□□ -1.57
SSH4YKL124W SUB2Q07478 446 aaKnown RBP5.26□□□□□ -1.57
SSH4YKL124W YDL124WQ07551 312 aaKnown RBP5.26□□□□□ -1.57
SSH4YKL124W TY3A-GQ12173 290 aa5.26□□□□□ -1.57
SSH4YKL124W TY3A-IQ99219 290 aa5.26□□□□□ -1.57
SSH4YKL124W PBY1P38254 753 aa5.25□□□□□ -1.57
SSH4YKL124W TIF4631P39935 952 aaKnown RBP5.25□□□□□ -1.57
SSH4YKL124W OSW7P43611 510 aa5.25□□□□□ -1.57
SSH4YKL124W ECM16Q04217 1267 aaKnown RBP5.25□□□□□ -1.57
SSH4YKL124W BRE1Q07457 700 aaKnown RBP5.25□□□□□ -1.57
SSH4YKL124W HIF1Q12373 385 aa5.25□□□□□ -1.57
SSH4YKL124W DIT2P21595 489 aa5.24□□□□□ -1.57
SSH4YKL124W PRE8P23639 250 aa5.24□□□□□ -1.57
SSH4YKL124W PER1P25625 357 aa5.24□□□□□ -1.57
SSH4YKL124W SPB4P25808 606 aaPredicted RBP5.24□□□□□ -1.57
SSH4YKL124W CDC60P26637 1090 aaKnown RBP5.24□□□□□ -1.57
SSH4YKL124W PAM1P37304 830 aaKnown RBP5.24□□□□□ -1.57
SSH4YKL124W RTS1P38903 757 aa5.24□□□□□ -1.57
SSH4YKL124W PES4P39684 611 aa5.24□□□□□ -1.57
SSH4YKL124W YMR147WP40218 223 aaKnown RBP5.24□□□□□ -1.57
SSH4YKL124W TFG1P41895 735 aaPredicted RBP5.24□□□□□ -1.57
SSH4YKL124W DOS2P54858 310 aa5.24□□□□□ -1.57
SSH4YKL124W SKG3Q06315 1026 aa5.24□□□□□ -1.57
SSH4YKL124W CFT2Q12102 859 aaPredicted RBP5.24□□□□□ -1.57
SSH4YKL124W TAH18Q12181 623 aa5.24□□□□□ -1.57
SSH4YKL124W ERG12P07277 443 aa5.23□□□□□ -1.57
SSH4YKL124W SRM1P21827 482 aa5.23□□□□□ -1.57
SSH4YKL124W OPI1P21957 404 aa5.23□□□□□ -1.57
SSH4YKL124W YDJ1P25491 409 aaKnown RBP5.23□□□□□ -1.57
SSH4YKL124W MCD4P36051 919 aa5.23□□□□□ -1.57
SSH4YKL124W MRPS35P53292 345 aa5.23□□□□□ -1.57
SSH4YKL124W PKH3Q03306 898 aaPredicted RBP5.23□□□□□ -1.57
SSH4YKL124W LAM4P38800 1345 aa5.23□□□□□ -1.57
SSH4YKL124W KTR1P27810 393 aaKnown RBP5.23□□□□□ -1.57
SSH4YKL124W SEC61P32915 480 aa5.23□□□□□ -1.57
SSH4YKL124W FUN12P39730 1002 aaKnown RBP5.23□□□□□ -1.57
SSH4YKL124W RAD61Q99359 647 aa5.23□□□□□ -1.57
SSH4YKL124W IXR1P33417 597 aa5.22□□□□□ -1.57
SSH4YKL124W MAC1P35192 417 aa5.22□□□□□ -1.57
SSH4YKL124W YHL050CP38721 697 aa5.22□□□□□ -1.57
SSH4YKL124W LAP2Q10740 671 aa5.22□□□□□ -1.57
SSH4YKL124W TUS1Q06412 1307 aa5.21□□□□□ -1.57
SSH4YKL124W FBP1P09201 348 aa5.21□□□□□ -1.58
SSH4YKL124W COQ8P27697 501 aa5.21□□□□□ -1.58
SSH4YKL124W MET1P36150 593 aa5.21□□□□□ -1.58
SSH4YKL124W EDS1P38073 919 aa5.21□□□□□ -1.58
SSH4YKL124W ISW1P38144 1129 aa5.21□□□□□ -1.58
SSH4YKL124W RFC1P38630 861 aaKnown RBP5.21□□□□□ -1.58
SSH4YKL124W YEL023CP39992 682 aa5.21□□□□□ -1.58
SSH4YKL124W ATH1P48016 1211 aa5.21□□□□□ -1.58
SSH4YKL124W ATG1P53104 897 aa5.21□□□□□ -1.58
SSH4YKL124W PIB2P53191 635 aa5.21□□□□□ -1.58
SSH4YKL124W RAD50P12753 1312 aa5.21□□□□□ -1.58
SSH4YKL124W COQ1P18900 473 aa5.2□□□□□ -1.58
SSH4YKL124W PKC1P24583 1151 aa5.2□□□□□ -1.58
SSH4YKL124W PTC3P34221 468 aaKnown RBP5.2□□□□□ -1.58
SSH4YKL124W FPR3P38911 411 aaKnown RBP5.2□□□□□ -1.58
SSH4YKL124W RRP8P38961 392 aaKnown RBP5.2□□□□□ -1.58
SSH4YKL124W GPB2P39717 880 aa5.2□□□□□ -1.58
SSH4YKL124W SLN1P39928 1220 aaPredicted RBP5.2□□□□□ -1.58
SSH4YKL124W PSF2P40359 213 aa5.2□□□□□ -1.58
SSH4YKL124W YJL007CP47080 104 aa5.2□□□□□ -1.58
SSH4YKL124W SOL4P53315 255 aa5.2□□□□□ -1.58
SSH4YKL124W YAF9P53930 226 aa5.2□□□□□ -1.58
SSH4YKL124W YML037CQ03703 340 aa5.2□□□□□ -1.58
SSH4YKL124W MRD1Q06106 887 aaKnown RBP5.2□□□□□ -1.58
SSH4YKL124W NKP2Q06162 153 aa5.2□□□□□ -1.58
SSH4YKL124W UBX5Q06682 500 aa5.2□□□□□ -1.58
SSH4YKL124W ICL2Q12031 575 aa5.2□□□□□ -1.58
SSH4YKL124W MAM3Q12296 706 aa5.2□□□□□ -1.58
SSH4YKL124W PDR1P12383 1068 aa5.2□□□□□ -1.58
SSH4YKL124W PAH1P32567 862 aa5.2□□□□□ -1.58
SSH4YKL124W STM1P39015 273 aaKnown RBP5.2□□□□□ -1.58
SSH4YKL124W MXR1P40029 184 aa5.2□□□□□ -1.58
SSH4YKL124W VID27P40157 782 aa5.2□□□□□ -1.58
SSH4YKL124W SSF2Q12153 453 aaPredicted RBP5.2□□□□□ -1.58
SSH4YKL124W EUG1P32474 517 aa5.19□□□□□ -1.58
SSH4YKL124W SKI2P35207 1287 aaKnown RBP RIP-Chip data5.19□□□□□ -1.58not detected
SSH4YKL124W YKR018CP36114 725 aa5.19□□□□□ -1.58
SSH4YKL124W ULP1Q02724 621 aa5.19□□□□□ -1.58
SSH4YKL124W RMD1Q03441 430 aa5.19□□□□□ -1.58
SSH4YKL124W SRS2P12954 1174 aa5.18□□□□□ -1.58
SSH4YKL124W KRS1P15180 591 aaKnown RBP5.18□□□□□ -1.58
SSH4YKL124W VMA2P16140 517 aaKnown RBP5.18□□□□□ -1.58
SSH4YKL124W VPS8P39702 1274 aa5.18□□□□□ -1.58
SSH4YKL124W PTK2P47116 818 aaKnown RBP5.18□□□□□ -1.58
SSH4YKL124W ALD6P54115 500 aaKnown RBP5.18□□□□□ -1.58
SSH4YKL124W RPS15Q01855 142 aaKnown RBP5.18□□□□□ -1.58
SSH4YKL124W CHS3P29465 1165 aa5.17□□□□□ -1.58
SSH4YKL124W MYO3P36006 1272 aa5.17□□□□□ -1.58
SSH4YKL124W PTC4P38089 393 aa5.17□□□□□ -1.58
SSH4YKL124W AIM21P40563 679 aa5.17□□□□□ -1.58
SSH4YKL124W DAN4P47179 1161 aa5.17□□□□□ -1.58
SSH4YKL124W UFD2P54860 961 aa5.17□□□□□ -1.58
Retrieved 100 of 5,963 RNA–protein pairs in 48.6 ms