RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W MON2P48563 1636 aaPredicted RBP9.1□□□□□ -0.95
SSH4YKL124W INO80P53115 1489 aa9□□□□□ -0.97
SSH4YKL124W MTC1P47018 478 aaKnown RBP8.83□□□□□ -1
SSH4YKL124W TCB3Q03640 1545 aaKnown RBP8.76□□□□□ -1.01
SSH4YKL124W TY1B-DR4Q07793 1604 aa8.7□□□□□ -1.02
SSH4YKL124W SWR1Q05471 1514 aa8.69□□□□□ -1.02
SSH4YKL124W SGS1P35187 1447 aa8.64□□□□□ -1.03
SSH4YKL124W DNA2P38859 1522 aa8.6□□□□□ -1.03
SSH4YKL124W KOG1P38873 1557 aa8.55□□□□□ -1.04
SSH4YKL124W FAP1P53971 965 aa8.45□□□□□ -1.06
SSH4YKL124W HSL1P34244 1518 aa8.42□□□□□ -1.06
SSH4YKL124W SPT6P23615 1451 aaKnown RBP8.39□□□□□ -1.07
SSH4YKL124W DRS1P32892 752 aaKnown RBP8.34□□□□□ -1.07
SSH4YKL124W SPA2P23201 1466 aaKnown RBP8.29□□□□□ -1.08
SSH4YKL124W HIR3P47171 1648 aa8.22□□□□□ -1.09
SSH4YKL124W THO2P53552 1597 aaKnown RBP8.16□□□□□ -1.1
SSH4YKL124W RSE1Q04693 1361 aaKnown RBP8.16□□□□□ -1.1
SSH4YKL124W BUD4P47136 1447 aa8.12□□□□□ -1.11
SSH4YKL124W ECM5Q03214 1411 aa8.1□□□□□ -1.11
SSH4YKL124W XRN1P22147 1528 aaKnown RBP8.06□□□□□ -1.12
SSH4YKL124W SSN2P38931 1420 aa8.04□□□□□ -1.12
SSH4YKL124W MDS3P53094 1487 aa8.02□□□□□ -1.12
SSH4YKL124W PEP1P32319 1579 aa7.97□□□□□ -1.13
SSH4YKL124W PRY3P47033 881 aa7.96□□□□□ -1.14
SSH4YKL124W REV3P14284 1504 aa7.96□□□□□ -1.14
SSH4YKL124W ATG2P53855 1592 aa7.95□□□□□ -1.14
SSH4YKL124W SIN3P22579 1536 aa7.93□□□□□ -1.14
SSH4YKL124W SSK2P53599 1579 aa7.83□□□□□ -1.16
SSH4YKL124W BPT1P14772 1559 aa7.8□□□□□ -1.16
SSH4YKL124W ESP1Q03018 1630 aa7.77□□□□□ -1.17
SSH4YKL124W SKI3P17883 1432 aaKnown RBP7.76□□□□□ -1.17
SSH4YKL124W TAF2P23255 1407 aa7.76□□□□□ -1.17
SSH4YKL124W MYO2P19524 1574 aaKnown RBP7.71□□□□□ -1.18
SSH4YKL124W YPK9Q12697 1472 aa7.69□□□□□ -1.18
SSH4YKL124W YCF1P39109 1515 aaKnown RBP7.68□□□□□ -1.18
SSH4YKL124W SCC2Q04002 1493 aa7.65□□□□□ -1.18
SSH4YKL124W UFD4P33202 1483 aa7.65□□□□□ -1.19
SSH4YKL124W RPO31P04051 1460 aa7.62□□□□□ -1.19
SSH4YKL124W CDC25P04821 1589 aa7.55□□□□□ -1.2
SSH4YKL124W TY2B-LR1P0C2J3 1770 aa7.54□□□□□ -1.2
SSH4YKL124W TY2B-FP0CX63 1770 aa7.54□□□□□ -1.2
SSH4YKL124W TY2B-GR2P0CX64 1770 aa7.54□□□□□ -1.2
SSH4YKL124W TY2B-CP25384 1770 aa7.54□□□□□ -1.2
SSH4YKL124W TY2B-DR2Q03494 1770 aa7.54□□□□□ -1.2
SSH4YKL124W TY1B-DR1Q03855 1755 aa7.54□□□□□ -1.2
SSH4YKL124W TY2B-DR3Q07791 1770 aaKnown RBP7.54□□□□□ -1.2
SSH4YKL124W TY2B-OR1Q12113 1770 aa7.54□□□□□ -1.2
SSH4YKL124W TY2B-DR1Q12472 1770 aa7.54□□□□□ -1.2
SSH4YKL124W TY2B-OR2Q12501 1770 aa7.54□□□□□ -1.2
SSH4YKL124W CHD1P32657 1468 aa7.53□□□□□ -1.2
SSH4YKL124W TOP2P06786 1428 aaKnown RBP7.5□□□□□ -1.21
SSH4YKL124W TY1B-BRQ12193 1756 aa7.5□□□□□ -1.21
SSH4YKL124W TY1B-GR3Q12316 1755 aa7.5□□□□□ -1.21
SSH4YKL124W TY1B-ORQ92393 1755 aa7.5□□□□□ -1.21
SSH4YKL124W POL1P13382 1468 aa7.48□□□□□ -1.21
SSH4YKL124W ESC1Q03661 1658 aaKnown RBP7.48□□□□□ -1.21
SSH4YKL124W MET5P47169 1442 aa7.47□□□□□ -1.21
SSH4YKL124W RKR1Q04781 1562 aa7.47□□□□□ -1.21
SSH4YKL124W PAN1P32521 1480 aa7.46□□□□□ -1.21
SSH4YKL124W DNF1P32660 1571 aa7.46□□□□□ -1.21
SSH4YKL124W TY2B-BQ12491 1770 aa7.45□□□□□ -1.22
SSH4YKL124W TY1B-HO13535 1793 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-DR5P0C2I2 1755 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-DR6P0C2I3 1755 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-LR2P0C2I5 1755 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-LR3P0C2I6 1755 aaKnown RBP7.44□□□□□ -1.22
SSH4YKL124W TY1B-PR1P0C2I9 1755 aaKnown RBP7.44□□□□□ -1.22
SSH4YKL124W TY1B-PR2P0C2J0 1756 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-PR3P0C2J1 1755 aaKnown RBP7.44□□□□□ -1.22
SSH4YKL124W TY1B-JR1P47098 1755 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-ML2Q03434 1755 aaKnown RBP7.44□□□□□ -1.22
SSH4YKL124W TY1B-ER1Q03612 1755 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-ML1Q04711 1755 aaKnown RBP7.44□□□□□ -1.22
SSH4YKL124W TY1B-GR2Q12269 1755 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-OLQ12273 1755 aa7.44□□□□□ -1.22
SSH4YKL124W TY1B-PLQ12414 1755 aaKnown RBP7.44□□□□□ -1.22
SSH4YKL124W TY1B-DR3Q99231 1755 aa7.44□□□□□ -1.22
SSH4YKL124W RPA190P10964 1664 aaKnown RBP7.42□□□□□ -1.22
SSH4YKL124W YOR1P53049 1477 aa7.41□□□□□ -1.22
SSH4YKL124W SMC4Q12267 1418 aa7.41□□□□□ -1.22
SSH4YKL124W PRI1P10363 409 aa7.41□□□□□ -1.22
SSH4YKL124W HAA1Q12753 694 aaKnown RBP7.41□□□□□ -1.22
SSH4YKL124W MMS22Q06164 1454 aa7.4□□□□□ -1.22
SSH4YKL124W AAD16Q02895 342 aa7.38□□□□□ -1.23
SSH4YKL124W STU1P38198 1513 aa7.37□□□□□ -1.23
SSH4YKL124W LTE1P07866 1435 aa7.37□□□□□ -1.23
SSH4YKL124W ISW2Q08773 1120 aa7.35□□□□□ -1.23
SSH4YKL124W RQC2Q12532 1038 aaKnown RBP7.35□□□□□ -1.23
SSH4YKL124W TRM732Q03496 1420 aa7.34□□□□□ -1.23
SSH4YKL124W SPP41P38904 1435 aa7.33□□□□□ -1.24
SSH4YKL124W NTE1Q04958 1679 aa7.3□□□□□ -1.24
SSH4YKL124W TY1B-JR2P47100 1755 aaKnown RBP7.29□□□□□ -1.24
SSH4YKL124W TY1B-ER2Q03619 1755 aa7.29□□□□□ -1.24
SSH4YKL124W TY1B-MR1Q04214 1755 aa7.29□□□□□ -1.24
SSH4YKL124W TY1B-MR2Q04670 1755 aaKnown RBP7.29□□□□□ -1.24
SSH4YKL124W TY1B-LR1Q12088 1755 aaKnown RBP7.29□□□□□ -1.24
SSH4YKL124W TY1B-NL1Q12112 1755 aa7.29□□□□□ -1.24
SSH4YKL124W TY1B-GR1Q12141 1755 aa7.29□□□□□ -1.24
SSH4YKL124W TY1B-BLQ12490 1755 aa7.29□□□□□ -1.24
SSH4YKL124W VTH1P40438 1549 aa7.29□□□□□ -1.24
Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms