RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	PDC6	P26263	563 aa	Known RBP	6.73	□□□□□ -1.33
CAF16	YFL028C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	6.73	□□□□□ -1.33	not detected
CAF16	YFL028C	PRP40	P33203	583 aa	Known RBP	6.73	□□□□□ -1.33
CAF16	YFL028C	YCS4	Q06156	1176 aa		6.73	□□□□□ -1.33
CAF16	YFL028C	WRS1	Q12109	432 aa	Known RBP	6.73	□□□□□ -1.33
CAF16	YFL028C	PSH1	Q12161	406 aa		6.73	□□□□□ -1.33
CAF16	YFL028C	FLP1	P03870	423 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	SLA1	P32790	1244 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	AIM46	P38885	310 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	MRPS18	P42847	217 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-LR1	P0C2J3	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-F	P0CX63	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-GR2	P0CX64	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-C	P25384	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-DR2	Q03494	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY1B-DR1	Q03855	1755 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-DR3	Q07791	1770 aa	Known RBP	6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-OR1	Q12113	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-DR1	Q12472	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	TY2B-OR2	Q12501	1770 aa		6.72	□□□□□ -1.33
CAF16	YFL028C	DAL1	P32375	460 aa		6.71	□□□□□ -1.34
CAF16	YFL028C	MNR2	P35724	969 aa		6.71	□□□□□ -1.34
CAF16	YFL028C	ECM2	P38241	364 aa	Known RBP	6.71	□□□□□ -1.34
CAF16	YFL028C	CUS1	Q02554	436 aa	Predicted RBP	6.71	□□□□□ -1.34
CAF16	YFL028C	PRE9	P23638	258 aa	Known RBP	6.7	□□□□□ -1.34
CAF16	YFL028C	SRP40	P32583	406 aa	Predicted RBP	6.7	□□□□□ -1.34
CAF16	YFL028C	UGA4	P32837	571 aa		6.7	□□□□□ -1.34
CAF16	YFL028C	YJR115W	P47152	169 aa		6.7	□□□□□ -1.34
CAF16	YFL028C	MON1	P53129	644 aa		6.7	□□□□□ -1.34
CAF16	YFL028C	EMG1	Q06287	252 aa	Known RBP	6.7	□□□□□ -1.34
CAF16	YFL028C	SSF2	Q12153	453 aa	Predicted RBP	6.7	□□□□□ -1.34
CAF16	YFL028C	MCD1	Q12158	566 aa		6.7	□□□□□ -1.34
CAF16	YFL028C	LEU1	P07264	779 aa	Known RBP	6.69	□□□□□ -1.34
CAF16	YFL028C	KAR2	P16474	682 aa	Known RBP	6.69	□□□□□ -1.34
CAF16	YFL028C	BRN1	P38170	754 aa		6.69	□□□□□ -1.34
CAF16	YFL028C	YJR098C	P47139	656 aa		6.69	□□□□□ -1.34
CAF16	YFL028C	POL1	P13382	1468 aa		6.68	□□□□□ -1.34
CAF16	YFL028C	MCM5	P29496	775 aa	Known RBP	6.68	□□□□□ -1.34
CAF16	YFL028C	VTC4	P47075	721 aa		6.68	□□□□□ -1.34
CAF16	YFL028C	LSC2	P53312	427 aa		6.68	□□□□□ -1.34
CAF16	YFL028C	CTR9	P89105	1077 aa		6.68	□□□□□ -1.34
CAF16	YFL028C	RKR1	Q04781	1562 aa		6.67	□□□□□ -1.34
CAF16	YFL028C	COB	P00163	385 aa		6.67	□□□□□ -1.34
CAF16	YFL028C	YKL091C	P33324	310 aa	Known RBP	6.67	□□□□□ -1.34
CAF16	YFL028C	NUP85	P46673	744 aa		6.67	□□□□□ -1.34
CAF16	YFL028C	GDE1	Q02979	1223 aa		6.67	□□□□□ -1.34
CAF16	YFL028C	YPL109C	Q02981	657 aa		6.67	□□□□□ -1.34
CAF16	YFL028C	RGP1	P16664	663 aa		6.66	□□□□□ -1.34
CAF16	YFL028C	IOC3	P43596	787 aa		6.66	□□□□□ -1.34
CAF16	YFL028C	ITC1	P53125	1264 aa		6.66	□□□□□ -1.34
CAF16	YFL028C	ULP1	Q02724	621 aa		6.66	□□□□□ -1.34
CAF16	YFL028C	IOC4	Q04213	475 aa		6.66	□□□□□ -1.34
CAF16	YFL028C	TCB1	Q12466	1186 aa		6.66	□□□□□ -1.34
CAF16	YFL028C	TOP2	P06786	1428 aa	Known RBP	6.66	□□□□□ -1.34
CAF16	YFL028C	TY1B-BR	Q12193	1756 aa		6.65	□□□□□ -1.34
CAF16	YFL028C	TY1B-GR3	Q12316	1755 aa		6.65	□□□□□ -1.34
CAF16	YFL028C	TY1B-OR	Q92393	1755 aa		6.65	□□□□□ -1.34
CAF16	YFL028C	PYC2	P32327	1180 aa	Known RBP	6.65	□□□□□ -1.34
CAF16	YFL028C	YIL165C	P40446	119 aa		6.65	□□□□□ -1.34
CAF16	YFL028C	SKP1	P52286	194 aa		6.65	□□□□□ -1.34
CAF16	YFL028C	NUT1	P53114	1132 aa		6.65	□□□□□ -1.34
CAF16	YFL028C	CDC25	P04821	1589 aa		6.65	□□□□□ -1.35
CAF16	YFL028C	TY2B-B	Q12491	1770 aa		6.64	□□□□□ -1.35
CAF16	YFL028C	TY1B-DR3	Q99231	1755 aa		6.64	□□□□□ -1.35
CAF16	YFL028C	APM2	P38700	605 aa		6.64	□□□□□ -1.35
CAF16	YFL028C	FAA4	P47912	694 aa	Known RBP	6.64	□□□□□ -1.35
CAF16	YFL028C	ADI1	Q03677	179 aa		6.64	□□□□□ -1.35
CAF16	YFL028C	STU1	P38198	1513 aa		6.64	□□□□□ -1.35
CAF16	YFL028C	CDC34	P14682	295 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	PRI2	P20457	528 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	CHD1	P32657	1468 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	DUR3	P33413	735 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	SPC42	P36094	363 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	NMD2	P38798	1089 aa	Known RBP	6.63	□□□□□ -1.35
CAF16	YFL028C	YJL049W	P47048	450 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	UBP15	P50101	1230 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	RNH70	P53331	553 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	YNR040W	P53736	256 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	NSE3	Q05541	303 aa		6.63	□□□□□ -1.35
CAF16	YFL028C	DPS1	P04802	557 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	PPG1	P32838	368 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	RVS167	P39743	482 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	PIC2	P40035	300 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	RSM26	P47141	266 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	MSH6	Q03834	1242 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	CDC53	Q12018	815 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-H	O13535	1793 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-DR5	P0C2I2	1755 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-DR6	P0C2I3	1755 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-LR2	P0C2I5	1755 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-LR3	P0C2I6	1755 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-PR1	P0C2I9	1755 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-PR2	P0C2J0	1756 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-PR3	P0C2J1	1755 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-JR1	P47098	1755 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-ML2	Q03434	1755 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-ER1	Q03612	1755 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-ML1	Q04711	1755 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-GR2	Q12269	1755 aa		6.62	□□□□□ -1.35
CAF16	YFL028C	TY1B-OL	Q12273	1755 aa		6.62	□□□□□ -1.35

Retrieved 100 of 5,963 RNA–protein pairs in 64.2 ms