RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	YDR209C	Q03480	137 aa		0.26	□□□□□ -2.37
PRP42	YDR235W	FAR8	Q05040	523 aa		0.26	□□□□□ -2.37
PRP42	YDR235W	YPR098C	Q06089	161 aa		0.26	□□□□□ -2.37
PRP42	YDR235W	NEJ1	Q06148	342 aa		0.26	□□□□□ -2.37
PRP42	YDR235W	ATG39	Q06159	398 aa		0.26	□□□□□ -2.37
PRP42	YDR235W	COQ10	Q08058	207 aa		0.26	□□□□□ -2.37
PRP42	YDR235W	RRP40	Q08285	240 aa	Known RBP	0.26	□□□□□ -2.37
PRP42	YDR235W	USB1	Q12208	290 aa	Known RBP	0.26	□□□□□ -2.37
PRP42	YDR235W	SNF8	Q12483	233 aa		0.26	□□□□□ -2.37
PRP42	YDR235W	SIR4	P11978	1358 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	RPL24A	P04449	155 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	RPL2A	P0CX45	254 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	RPL2B	P0CX46	254 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	PET9	P18239	318 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	DAL82	P21705	255 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	EHD3	P28817	500 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	YHR180W	P38868	163 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	SMB1	P40018	196 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	RPL13B	P40212	199 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	RMR1	P53060	241 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	SPG4	Q04438	115 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	ADH6	Q04894	360 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	COX20	Q04935	205 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	SML1	Q04964	104 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	YLR162W	Q06235	118 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	ARR2	Q06597	130 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	HEM25	Q07534	307 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	YOR186W	Q08560	144 aa		0.25	□□□□□ -2.37
PRP42	YDR235W	RRS1	Q08746	203 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	RPL13A	Q12690	199 aa	Predicted RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	FKS1	P38631	1876 aa	Known RBP	0.25	□□□□□ -2.37
PRP42	YDR235W	COX2	P00410	251 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	SNA3	P14359	133 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	GRX2	P17695	143 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	HOM6	P31116	359 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	YPT52	P36018	234 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	EBP2	P36049	427 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	MRPL37	P36532	105 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	YBR096W	P38256	230 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	GOS1	P38736	223 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	YAR068W	P39564	161 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	THO1	P40040	218 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	YJR079W	P47126	109 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	NUP57	P48837	541 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	TOS8	P53147	276 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	ERV25	P54837	211 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	YPR172W	Q06608	200 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	NIP7	Q08962	181 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	HTL1	Q9URQ5	78 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	QCR8	P08525	94 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	GPA2	P10823	449 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	POL30	P15873	258 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	FCY2	P17064	533 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	RNA15	P25299	296 aa	Predicted RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	UPS2	P35200	230 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	SVP26	P38869	228 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	MEP1	P40260	492 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	TIR3	P40552	269 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	RPL33B	P41056	107 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	GLG2	P47011	380 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	YJR056C	P47115	236 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	USE1	P53146	245 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	YNL046W	P53956	172 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	RHO3	Q00245	231 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	MSA1	Q08471	629 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	BTS1	Q12051	335 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	RIO1	Q12196	484 aa	Known RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	YCT1	Q12235	531 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	TPO4	Q12256	659 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	SNU23	Q12368	194 aa	Predicted RBP	0.24	□□□□□ -2.37
PRP42	YDR235W	YOR020W-A	Q3E824	90 aa		0.24	□□□□□ -2.37
PRP42	YDR235W	UBR2	Q07963	1872 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	CDC8	P00572	216 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	MEI4	P29467	408 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	YBR063C	P38083	404 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	ECM33	P38248	429 aa	Known RBP	0.23	□□□□□ -2.37
PRP42	YDR235W	TCD1	P38756	429 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	RRF1	P38771	230 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	RPF1	P38805	295 aa	Known RBP	0.23	□□□□□ -2.37
PRP42	YDR235W	BIG1	P38813	335 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	YHR127W	P38833	243 aa	Known RBP	0.23	□□□□□ -2.37
PRP42	YDR235W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	0.23	□□□□□ -2.37	not detected
PRP42	YDR235W	PET100	P38958	111 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	CAT5	P41735	233 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	RPA43	P46669	326 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	YAR1	P46683	200 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	HAM1	P47119	197 aa	Known RBP	0.23	□□□□□ -2.37
PRP42	YDR235W	ILM1	P47155	203 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	MPP6	P53725	186 aa	Predicted RBP	0.23	□□□□□ -2.37
PRP42	YDR235W	SSQ1	Q05931	657 aa	Predicted RBP	0.23	□□□□□ -2.37
PRP42	YDR235W	SEI1	Q06058	285 aa		0.23	□□□□□ -2.37
PRP42	YDR235W	SDO1	Q07953	250 aa	Known RBP	0.23	□□□□□ -2.37
PRP42	YDR235W	VAR1	P02381	398 aa		0.22	□□□□□ -2.37
PRP42	YDR235W	CPA1	P07258	411 aa	Known RBP	0.22	□□□□□ -2.37
PRP42	YDR235W	ERD2	P18414	219 aa		0.22	□□□□□ -2.37
PRP42	YDR235W	RPS5	P26783	225 aa	Known RBP	0.22	□□□□□ -2.37
PRP42	YDR235W	FZF1	P32805	299 aa		0.22	□□□□□ -2.37
PRP42	YDR235W	YNL217W	P40152	326 aa		0.22	□□□□□ -2.37
PRP42	YDR235W	YMR144W	P40214	342 aa	Known RBP	0.22	□□□□□ -2.37
PRP42	YDR235W	PGD1	P40356	397 aa		0.22	□□□□□ -2.37

Retrieved 100 of 5,963 RNA–protein pairs in 46.9 ms