Protein–RNA interactions for Protein: Q08471

MSA1, G1-specific transcription factors activator MSA1, yeastyeast

Predictions only

Length 629 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSA1Q08471 YML009W-BYML009W-B 477 nt16.46■□□□□ 0.23
MSA1Q08471 NOP1YDL014W 984 nt16.17■□□□□ 0.18
MSA1Q08471 NSR1YGR159C 1245 nt16.06■□□□□ 0.16
MSA1Q08471 YKL036CYKL036C 393 nt15.27■□□□□ 0.04
MSA1Q08471 YJL027CYJL027C 417 nt14.31□□□□□ -0.12
MSA1Q08471 Q0297Q0297 156 nt14.29□□□□□ -0.12
MSA1Q08471 SRX1YKL086W 384 nt14.14□□□□□ -0.15
MSA1Q08471 SCS3YGL126W 1143 nt14.08□□□□□ -0.16
MSA1Q08471 MDJ1YFL016C 1536 nt13.86□□□□□ -0.19
MSA1Q08471 YCR051WYCR051W 669 nt13.41□□□□□ -0.26
MSA1Q08471 YOL085CYOL085C 342 nt13.21□□□□□ -0.29
MSA1Q08471 SCJ1YMR214W 1134 nt12.98□□□□□ -0.33
MSA1Q08471 PKP1YIL042C 1185 nt12.94□□□□□ -0.34
MSA1Q08471 RPP1BYDL130W 321 nt12.82□□□□□ -0.36
MSA1Q08471 ATS1YAL020C 1002 nt12.7□□□□□ -0.38
MSA1Q08471 TRN1tP(UGG)A 72 nt12.56□□□□□ -0.4
MSA1Q08471 SUF9tP(UGG)F 72 nt12.56□□□□□ -0.4
MSA1Q08471 SUF8tP(UGG)H 72 nt12.56□□□□□ -0.4
MSA1Q08471 tP(UGG)LtP(UGG)L 72 nt12.56□□□□□ -0.4
MSA1Q08471 SUF7tP(UGG)M 72 nt12.56□□□□□ -0.4
MSA1Q08471 tP(UGG)N1tP(UGG)N1 72 nt12.56□□□□□ -0.4
MSA1Q08471 tP(UGG)N2tP(UGG)N2 72 nt12.56□□□□□ -0.4
MSA1Q08471 tP(UGG)O1tP(UGG)O1 72 nt12.56□□□□□ -0.4
MSA1Q08471 SUF11tP(UGG)O2 72 nt12.56□□□□□ -0.4
MSA1Q08471 DBP2YNL112W 1641 nt12.44□□□□□ -0.42
MSA1Q08471 CCC1YLR220W 969 nt12.4□□□□□ -0.42
MSA1Q08471 PET122YER153C 765 nt12.19□□□□□ -0.46
MSA1Q08471 SCR1SCR1 522 nt12.17□□□□□ -0.46
MSA1Q08471 tP(UGG)O3tP(UGG)O3 72 nt12□□□□□ -0.49
MSA1Q08471 RRN5YLR141W 1092 nt11.87□□□□□ -0.51
MSA1Q08471 SSA3YBL075C 1950 nt11.87□□□□□ -0.51
MSA1Q08471 RVS167YDR388W 1449 nt11.79□□□□□ -0.52
MSA1Q08471 RTC3YHR087W 336 nt11.76□□□□□ -0.53
MSA1Q08471 YBR190WYBR190W 312 nt11.76□□□□□ -0.53
MSA1Q08471 RSB1YOR049C 1065 nt11.73□□□□□ -0.53
MSA1Q08471 PST2YDR032C 597 nt11.71□□□□□ -0.53
MSA1Q08471 YER088W-BYER088W-B 147 nt11.65□□□□□ -0.54
MSA1Q08471 YDJ1YNL064C 1230 nt11.62□□□□□ -0.55
MSA1Q08471 SHR5YOL110W 714 nt11.48□□□□□ -0.57
MSA1Q08471 YKL097CYKL097C 411 nt11.43□□□□□ -0.58
MSA1Q08471 GAR1YHR089C 618 nt11.27□□□□□ -0.61
MSA1Q08471 SHU1YHL006C 453 nt11.13□□□□□ -0.63
MSA1Q08471 DEP1YAL013W 1218 nt10.98□□□□□ -0.65
MSA1Q08471 YOR139CYOR139C 393 nt10.91□□□□□ -0.66
MSA1Q08471 URN1YPR152C 1398 nt10.9□□□□□ -0.66
MSA1Q08471 TIR1YER011W 765 nt10.89□□□□□ -0.67
MSA1Q08471 YNL208WYNL208W 600 nt10.89□□□□□ -0.67
MSA1Q08471 RPN10YHR200W 807 nt10.85□□□□□ -0.67
MSA1Q08471 YAL037C-BYAL037C-B 975 nt10.82□□□□□ -0.68
MSA1Q08471 PUT4YOR348C 1884 nt10.82□□□□□ -0.68
MSA1Q08471 NPL3YDR432W 1245 nt10.73□□□□□ -0.69
MSA1Q08471 OPI9YLR338W 858 nt10.68□□□□□ -0.7
MSA1Q08471 SSA1YAL005C 1929 nt10.68□□□□□ -0.7
MSA1Q08471 YGR021WYGR021W 873 nt10.55□□□□□ -0.72
MSA1Q08471 SRB2YHR041C 633 nt10.55□□□□□ -0.72
MSA1Q08471 HOM6YJR139C 1080 nt10.52□□□□□ -0.73
MSA1Q08471 YOL037CYOL037C 354 nt10.51□□□□□ -0.73
MSA1Q08471 MNP1YGL068W 585 nt10.5□□□□□ -0.73
MSA1Q08471 SAH1YER043C 1350 nt10.5□□□□□ -0.73
MSA1Q08471 SPT5YML010W 3192 nt10.47□□□□□ -0.73
MSA1Q08471 WWM1YFL010C 636 nt10.46□□□□□ -0.73
MSA1Q08471 tM(CAU)CtM(CAU)C 72 nt10.46□□□□□ -0.73
MSA1Q08471 IMT4tM(CAU)E 72 nt10.46□□□□□ -0.73
MSA1Q08471 IMT3tM(CAU)J3 72 nt10.46□□□□□ -0.73
MSA1Q08471 IMT1tM(CAU)O1 72 nt10.46□□□□□ -0.73
MSA1Q08471 IMT2tM(CAU)P 72 nt10.46□□□□□ -0.73
MSA1Q08471 YJR018WYJR018W 363 nt10.43□□□□□ -0.74
MSA1Q08471 ARE1YCR048W 1833 nt10.4□□□□□ -0.74
MSA1Q08471 PUN1YLR414C 792 nt10.38□□□□□ -0.75
MSA1Q08471 POA1YBR022W 534 nt10.38□□□□□ -0.75
MSA1Q08471 SSA4YER103W 1929 nt10.38□□□□□ -0.75
MSA1Q08471 RKM5YLR137W 1104 nt10.36□□□□□ -0.75
MSA1Q08471 YJR120WYJR120W 351 nt10.35□□□□□ -0.75
MSA1Q08471 RPP2BYDR382W 333 nt10.33□□□□□ -0.76
MSA1Q08471 YFL021C-AYFL021C-A 855 nt10.31□□□□□ -0.76
MSA1Q08471 BSC6YOL137W 1494 nt10.3□□□□□ -0.76
MSA1Q08471 PUS2YGL063W 1113 nt10.24□□□□□ -0.77
MSA1Q08471 YHR049C-AYHR049C-A 297 nt10.24□□□□□ -0.77
MSA1Q08471 YLR281CYLR281C 468 nt10.23□□□□□ -0.77
MSA1Q08471 MOT3YMR070W 1473 nt10.21□□□□□ -0.78
MSA1Q08471 BDH2YAL061W 1254 nt10.2□□□□□ -0.78
MSA1Q08471 PTC2YER089C 1395 nt10.17□□□□□ -0.78
MSA1Q08471 LSM3YLR438C-A 270 nt10.15□□□□□ -0.78
MSA1Q08471 WHI5YOR083W 888 nt10.13□□□□□ -0.79
MSA1Q08471 BDF1YLR399C 2061 nt10.1□□□□□ -0.79
MSA1Q08471 INM2YDR287W 879 nt10.02□□□□□ -0.81
MSA1Q08471 NAB2YGL122C 1578 nt10□□□□□ -0.81
MSA1Q08471 YBL100CYBL100C 315 nt9.99□□□□□ -0.81
MSA1Q08471 FMP45YDL222C 930 nt9.97□□□□□ -0.81
MSA1Q08471 MRPL8YJL063C 717 nt9.97□□□□□ -0.81
MSA1Q08471 DSK2YMR276W 1122 nt9.97□□□□□ -0.81
MSA1Q08471 YPR011CYPR011C 981 nt9.95□□□□□ -0.82
MSA1Q08471 DAL1YIR027C 1383 nt9.94□□□□□ -0.82
MSA1Q08471 BUD23YCR047C 828 nt9.94□□□□□ -0.82
MSA1Q08471 IMP2'YIL154C 1041 nt9.94□□□□□ -0.82
MSA1Q08471 TAT1YBR069C 1860 nt9.93□□□□□ -0.82
MSA1Q08471 TRM9YML014W 840 nt9.93□□□□□ -0.82
MSA1Q08471 YCH1YGR203W 447 nt9.92□□□□□ -0.82
MSA1Q08471 YLR236CYLR236C 324 nt9.91□□□□□ -0.82
MSA1Q08471 FIS1YIL065C 468 nt9.9□□□□□ -0.82
Retrieved 100 of 7,029 protein–RNA pairs in 14 ms