RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	RBS1	Q05672	457 aa	Known RBP	4.08	□□□□□ -1.76
NMD3	YHR170W	NEJ1	Q06148	342 aa		4.08	□□□□□ -1.76
NMD3	YHR170W	YLR446W	Q06204	433 aa		4.08	□□□□□ -1.76
NMD3	YHR170W	YOR214C	Q12282	236 aa		4.08	□□□□□ -1.76
NMD3	YHR170W	DET1	Q99288	334 aa	Known RBP	4.08	□□□□□ -1.76
NMD3	YHR170W	TRA1	P38811	3744 aa		4.08	□□□□□ -1.76
NMD3	YHR170W	KIN28	P06242	306 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	ARF1	P11076	181 aa	Known RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	CLB2	P24869	491 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	YEF1	P32622	495 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	UTP11	P34247	250 aa	Predicted RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	SHE1	P38200	338 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	RRP4	P38792	359 aa	Known RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	NSG1	P38837	291 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	CHL4	P38907	458 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	YJL193W	P39542	402 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	SER3	P40054	469 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	STB1	P42845	420 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	QRI1	P43123	477 aa	Known RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	RBL2	P48606	106 aa	Known RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	DML1	Q03652	475 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	ECM18	Q04623	453 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	MDM36	Q06820	579 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	SYO1	Q07395	620 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	MRPL23	Q12487	163 aa	Predicted RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	YIL002W-A	Q3E7Z5	69 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	BLM10	P43583	2143 aa		4.07	□□□□□ -1.76
NMD3	YHR170W	SEC16	P48415	2195 aa	Known RBP	4.07	□□□□□ -1.76
NMD3	YHR170W	HSP30	P25619	332 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	WBP1	P33767	430 aa	Known RBP	4.06	□□□□□ -1.76
NMD3	YHR170W	BUR6	P40096	142 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	FMC1	P40491	155 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	RRN9	P53437	365 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	YLR460C	P54007	376 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	RSM28	Q03430	361 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	EKI1	Q03764	534 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	GPI17	Q04080	534 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	URC2	Q04411	772 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	YLR173W	Q06247	608 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	HRT1	Q08273	121 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	RDR1	Q08904	546 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	YPL272C	Q08984	517 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	BTS1	Q12051	335 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	RLM1	Q12224	676 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	RPN13	O13563	156 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	COX1	P00401	534 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	YML003W	P0CF16	290 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	DPM1	P14020	267 aa	Known RBP	4.06	□□□□□ -1.76
NMD3	YHR170W	VMA16	P23968	213 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	PMT2	P31382	759 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	AFG1	P32317	509 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	JEN1	P36035	616 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	GPX2	P38143	162 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	MTC4	P38335	694 aa	Known RBP	4.06	□□□□□ -1.76
NMD3	YHR170W	PCL6	P40038	420 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	JLP2	P40206	208 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	CUP9	P41817	306 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	PMT6	P42934	759 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	YGL235W	P53071	178 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	YGL101W	P53144	215 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	LSG1	P53145	640 aa	Known RBP	4.06	□□□□□ -1.76
NMD3	YHR170W	SEC13	Q04491	297 aa	Known RBP	4.06	□□□□□ -1.76
NMD3	YHR170W	GAL83	Q04739	417 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	TAZ1	Q06510	381 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	YDL114W	Q07530	308 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	FMP40	Q08968	688 aa	Predicted RBP	4.06	□□□□□ -1.76
NMD3	YHR170W	MSH5	Q12175	901 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	PCL9	Q12477	304 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	TAD3	Q9URQ3	322 aa		4.06	□□□□□ -1.76
NMD3	YHR170W	REP1	P03871	373 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	CDC43	P18898	376 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	RPB8	P20436	146 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	PBN1	P25580	416 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	CNE1	P27825	502 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	SNC1	P31109	117 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
NMD3	YHR170W	ZUO1	P32527	433 aa	Known RBP	4.05	□□□□□ -1.76
NMD3	YHR170W	YHR180W	P38868	163 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	NVJ1	P38881	321 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	HXT9	P40885	567 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	MDV1	P47025	714 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	CWC23	P52868	283 aa	Predicted RBP	4.05	□□□□□ -1.76
NMD3	YHR170W	BRR6	P53062	197 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	YIP4	P53093	235 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	CPR8	P53728	308 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	HXT11	P54862	567 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	SRL4	Q03085	281 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	RRP17	Q04031	235 aa	Predicted RBP	4.05	□□□□□ -1.76
NMD3	YHR170W	SNT309	Q06091	175 aa	Predicted RBP	4.05	□□□□□ -1.76
NMD3	YHR170W	YPR127W	Q06494	345 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	PEX27	Q08580	376 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	YOR289W	Q12012	251 aa	Predicted RBP	4.05	□□□□□ -1.76
NMD3	YHR170W	FRE7	Q12333	620 aa		4.05	□□□□□ -1.76
NMD3	YHR170W	YEL009C-A	A0A023PZF2	135 aa		4.04	□□□□□ -1.76
NMD3	YHR170W	CTA1	P15202	515 aa		4.04	□□□□□ -1.76
NMD3	YHR170W	GIT1	P25346	518 aa		4.04	□□□□□ -1.76
NMD3	YHR170W	MRPL4	P36517	319 aa		4.04	□□□□□ -1.76
NMD3	YHR170W	YPT10	P38146	199 aa		4.04	□□□□□ -1.76
NMD3	YHR170W	MAL32	P38158	584 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms