Protein–RNA interactions for Protein: P20436

RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3, yeastyeast

Predictions only

Length 146 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPB8P20436 YML009W-BYML009W-B 477 nt18.3■□□□□ 0.52
RPB8P20436 NSR1YGR159C 1245 nt18.28■□□□□ 0.52
RPB8P20436 NOP1YDL014W 984 nt17.72■□□□□ 0.43
RPB8P20436 MDJ1YFL016C 1536 nt16.35■□□□□ 0.21
RPB8P20436 YKL036CYKL036C 393 nt16.28■□□□□ 0.2
RPB8P20436 Q0297Q0297 156 nt15.52■□□□□ 0.08
RPB8P20436 SRX1YKL086W 384 nt15.51■□□□□ 0.07
RPB8P20436 YJL027CYJL027C 417 nt15.18■□□□□ 0.02
RPB8P20436 SCS3YGL126W 1143 nt14.78□□□□□ -0.04
RPB8P20436 YCR051WYCR051W 669 nt14.69□□□□□ -0.06
RPB8P20436 DBP2YNL112W 1641 nt14.46□□□□□ -0.09
RPB8P20436 YOL085CYOL085C 342 nt14.13□□□□□ -0.15
RPB8P20436 TRN1tP(UGG)A 72 nt14.11□□□□□ -0.15
RPB8P20436 SUF9tP(UGG)F 72 nt14.11□□□□□ -0.15
RPB8P20436 SUF8tP(UGG)H 72 nt14.11□□□□□ -0.15
RPB8P20436 tP(UGG)LtP(UGG)L 72 nt14.11□□□□□ -0.15
RPB8P20436 SUF7tP(UGG)M 72 nt14.11□□□□□ -0.15
RPB8P20436 tP(UGG)N1tP(UGG)N1 72 nt14.11□□□□□ -0.15
RPB8P20436 tP(UGG)N2tP(UGG)N2 72 nt14.11□□□□□ -0.15
RPB8P20436 tP(UGG)O1tP(UGG)O1 72 nt14.11□□□□□ -0.15
RPB8P20436 SUF11tP(UGG)O2 72 nt14.11□□□□□ -0.15
RPB8P20436 YBR190WYBR190W 312 nt13.95□□□□□ -0.18
RPB8P20436 CCC1YLR220W 969 nt13.94□□□□□ -0.18
RPB8P20436 PKP1YIL042C 1185 nt13.92□□□□□ -0.18
RPB8P20436 RPP1BYDL130W 321 nt13.91□□□□□ -0.18
RPB8P20436 RTC3YHR087W 336 nt13.62□□□□□ -0.23
RPB8P20436 RVS167YDR388W 1449 nt13.49□□□□□ -0.25
RPB8P20436 SCJ1YMR214W 1134 nt13.47□□□□□ -0.25
RPB8P20436 PET122YER153C 765 nt13.33□□□□□ -0.28
RPB8P20436 tP(UGG)O3tP(UGG)O3 72 nt13.3□□□□□ -0.28
RPB8P20436 ATS1YAL020C 1002 nt13.19□□□□□ -0.3
RPB8P20436 SCR1SCR1 522 nt13.11□□□□□ -0.31
RPB8P20436 SHR5YOL110W 714 nt13.03□□□□□ -0.32
RPB8P20436 RRN5YLR141W 1092 nt12.93□□□□□ -0.34
RPB8P20436 YDJ1YNL064C 1230 nt12.86□□□□□ -0.35
RPB8P20436 PUT4YOR348C 1884 nt12.78□□□□□ -0.36
RPB8P20436 URN1YPR152C 1398 nt12.73□□□□□ -0.37
RPB8P20436 DEP1YAL013W 1218 nt12.7□□□□□ -0.38
RPB8P20436 YER088W-BYER088W-B 147 nt12.68□□□□□ -0.38
RPB8P20436 RSB1YOR049C 1065 nt12.61□□□□□ -0.39
RPB8P20436 GAR1YHR089C 618 nt12.6□□□□□ -0.39
RPB8P20436 OPI9YLR338W 858 nt12.57□□□□□ -0.4
RPB8P20436 SAH1YER043C 1350 nt12.53□□□□□ -0.4
RPB8P20436 ARE1YCR048W 1833 nt12.53□□□□□ -0.4
RPB8P20436 RPN10YHR200W 807 nt12.48□□□□□ -0.41
RPB8P20436 YNL208WYNL208W 600 nt12.48□□□□□ -0.41
RPB8P20436 POA1YBR022W 534 nt12.36□□□□□ -0.43
RPB8P20436 YHR049C-AYHR049C-A 297 nt12.34□□□□□ -0.43
RPB8P20436 PST2YDR032C 597 nt12.25□□□□□ -0.45
RPB8P20436 PUN1YLR414C 792 nt12.19□□□□□ -0.46
RPB8P20436 TIR1YER011W 765 nt12.18□□□□□ -0.46
RPB8P20436 SSA3YBL075C 1950 nt12.14□□□□□ -0.47
RPB8P20436 YJR018WYJR018W 363 nt12.13□□□□□ -0.47
RPB8P20436 BSC6YOL137W 1494 nt12.12□□□□□ -0.47
RPB8P20436 SSA1YAL005C 1929 nt12.08□□□□□ -0.48
RPB8P20436 PTC2YER089C 1395 nt12.07□□□□□ -0.48
RPB8P20436 BUD23YCR047C 828 nt12.02□□□□□ -0.49
RPB8P20436 YJR120WYJR120W 351 nt11.98□□□□□ -0.49
RPB8P20436 NAB2YGL122C 1578 nt11.92□□□□□ -0.5
RPB8P20436 SRB2YHR041C 633 nt11.9□□□□□ -0.5
RPB8P20436 RPP2BYDR382W 333 nt11.83□□□□□ -0.52
RPB8P20436 FIS1YIL065C 468 nt11.78□□□□□ -0.52
RPB8P20436 SHU1YHL006C 453 nt11.77□□□□□ -0.53
RPB8P20436 DAL1YIR027C 1383 nt11.75□□□□□ -0.53
RPB8P20436 INM2YDR287W 879 nt11.7□□□□□ -0.54
RPB8P20436 FPR4YLR449W 1179 nt11.7□□□□□ -0.54
RPB8P20436 SPT5YML010W 3192 nt11.68□□□□□ -0.54
RPB8P20436 YKL097CYKL097C 411 nt11.67□□□□□ -0.54
RPB8P20436 PHO4YFR034C 939 nt11.65□□□□□ -0.54
RPB8P20436 WWM1YFL010C 636 nt11.64□□□□□ -0.55
RPB8P20436 YAL037C-BYAL037C-B 975 nt11.62□□□□□ -0.55
RPB8P20436 BDH2YAL061W 1254 nt11.61□□□□□ -0.55
RPB8P20436 YBL100CYBL100C 315 nt11.58□□□□□ -0.56
RPB8P20436 YGR021WYGR021W 873 nt11.51□□□□□ -0.57
RPB8P20436 HOM6YJR139C 1080 nt11.5□□□□□ -0.57
RPB8P20436 YPS1YLR120C 1710 nt11.46□□□□□ -0.57
RPB8P20436 FUN26YAL022C 1554 nt11.45□□□□□ -0.58
RPB8P20436 YFL021C-AYFL021C-A 855 nt11.43□□□□□ -0.58
RPB8P20436 MNP1YGL068W 585 nt11.43□□□□□ -0.58
RPB8P20436 LSM3YLR438C-A 270 nt11.43□□□□□ -0.58
RPB8P20436 TRM9YML014W 840 nt11.39□□□□□ -0.59
RPB8P20436 YDR095CYDR095C 411 nt11.38□□□□□ -0.59
RPB8P20436 MEP2YNL142W 1500 nt11.38□□□□□ -0.59
RPB8P20436 RKM5YLR137W 1104 nt11.32□□□□□ -0.6
RPB8P20436 YHR165W-AYHR165W-A 312 nt11.31□□□□□ -0.6
RPB8P20436 CCT6YDR188W 1641 nt11.31□□□□□ -0.6
RPB8P20436 ALF1YNL148C 765 nt11.28□□□□□ -0.6
RPB8P20436 YOR139CYOR139C 393 nt11.27□□□□□ -0.61
RPB8P20436 SSA4YER103W 1929 nt11.24□□□□□ -0.61
RPB8P20436 DCW1YKL046C 1350 nt11.22□□□□□ -0.61
RPB8P20436 SUF2tP(AGG)C 72 nt11.18□□□□□ -0.62
RPB8P20436 SUF10tP(AGG)N 72 nt11.18□□□□□ -0.62
RPB8P20436 YOL037CYOL037C 354 nt11.17□□□□□ -0.62
RPB8P20436 PTP1YDL230W 1008 nt11.16□□□□□ -0.62
RPB8P20436 SIS1YNL007C 1059 nt11.15□□□□□ -0.62
RPB8P20436 RPP2AYOL039W 321 nt11.15□□□□□ -0.62
RPB8P20436 NPL3YDR432W 1245 nt11.14□□□□□ -0.63
RPB8P20436 CAC2YML102W 1407 nt11.08□□□□□ -0.64
RPB8P20436 EMI2YDR516C 1503 nt11.06□□□□□ -0.64
RPB8P20436 Q0182Q0182 405 nt11.04□□□□□ -0.64
Retrieved 100 of 7,029 protein–RNA pairs in 13.3 ms