Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YML009W-BYML009W-B 477 nt18.92■□□□□ 0.62
CUP9P41817 NSR1YGR159C 1245 nt18.65■□□□□ 0.58
CUP9P41817 NOP1YDL014W 984 nt18.53■□□□□ 0.56
CUP9P41817 YKL036CYKL036C 393 nt17.26■□□□□ 0.35
CUP9P41817 MDJ1YFL016C 1536 nt16.3■□□□□ 0.2
CUP9P41817 Q0297Q0297 156 nt16.26■□□□□ 0.19
CUP9P41817 SRX1YKL086W 384 nt16.16■□□□□ 0.18
CUP9P41817 YJL027CYJL027C 417 nt16.15■□□□□ 0.18
CUP9P41817 SCS3YGL126W 1143 nt15.79■□□□□ 0.12
CUP9P41817 YCR051WYCR051W 669 nt15.34■□□□□ 0.05
CUP9P41817 YOL085CYOL085C 342 nt14.93□□□□□ -0.02
CUP9P41817 PKP1YIL042C 1185 nt14.64□□□□□ -0.07
CUP9P41817 RPP1BYDL130W 321 nt14.59□□□□□ -0.07
CUP9P41817 DBP2YNL112W 1641 nt14.5□□□□□ -0.09
CUP9P41817 TRN1tP(UGG)A 72 nt14.48□□□□□ -0.09
CUP9P41817 SUF9tP(UGG)F 72 nt14.48□□□□□ -0.09
CUP9P41817 SUF8tP(UGG)H 72 nt14.48□□□□□ -0.09
CUP9P41817 tP(UGG)LtP(UGG)L 72 nt14.48□□□□□ -0.09
CUP9P41817 SUF7tP(UGG)M 72 nt14.48□□□□□ -0.09
CUP9P41817 tP(UGG)N1tP(UGG)N1 72 nt14.48□□□□□ -0.09
CUP9P41817 tP(UGG)N2tP(UGG)N2 72 nt14.48□□□□□ -0.09
CUP9P41817 tP(UGG)O1tP(UGG)O1 72 nt14.48□□□□□ -0.09
CUP9P41817 SUF11tP(UGG)O2 72 nt14.48□□□□□ -0.09
CUP9P41817 CCC1YLR220W 969 nt14.31□□□□□ -0.12
CUP9P41817 SCJ1YMR214W 1134 nt14.31□□□□□ -0.12
CUP9P41817 ATS1YAL020C 1002 nt14.18□□□□□ -0.14
CUP9P41817 YBR190WYBR190W 312 nt13.9□□□□□ -0.18
CUP9P41817 PET122YER153C 765 nt13.89□□□□□ -0.19
CUP9P41817 SCR1SCR1 522 nt13.85□□□□□ -0.19
CUP9P41817 RVS167YDR388W 1449 nt13.77□□□□□ -0.21
CUP9P41817 tP(UGG)O3tP(UGG)O3 72 nt13.76□□□□□ -0.21
CUP9P41817 RTC3YHR087W 336 nt13.59□□□□□ -0.23
CUP9P41817 RRN5YLR141W 1092 nt13.51□□□□□ -0.25
CUP9P41817 YDJ1YNL064C 1230 nt13.35□□□□□ -0.27
CUP9P41817 SHR5YOL110W 714 nt13.31□□□□□ -0.28
CUP9P41817 RSB1YOR049C 1065 nt13.31□□□□□ -0.28
CUP9P41817 YER088W-BYER088W-B 147 nt13.25□□□□□ -0.29
CUP9P41817 PST2YDR032C 597 nt13.1□□□□□ -0.31
CUP9P41817 GAR1YHR089C 618 nt12.97□□□□□ -0.33
CUP9P41817 DEP1YAL013W 1218 nt12.81□□□□□ -0.36
CUP9P41817 URN1YPR152C 1398 nt12.79□□□□□ -0.36
CUP9P41817 RPN10YHR200W 807 nt12.71□□□□□ -0.37
CUP9P41817 YKL097CYKL097C 411 nt12.71□□□□□ -0.37
CUP9P41817 YNL208WYNL208W 600 nt12.69□□□□□ -0.38
CUP9P41817 OPI9YLR338W 858 nt12.58□□□□□ -0.4
CUP9P41817 TIR1YER011W 765 nt12.54□□□□□ -0.4
CUP9P41817 SHU1YHL006C 453 nt12.5□□□□□ -0.41
CUP9P41817 PUT4YOR348C 1884 nt12.41□□□□□ -0.42
CUP9P41817 SAH1YER043C 1350 nt12.41□□□□□ -0.42
CUP9P41817 SSA1YAL005C 1929 nt12.32□□□□□ -0.44
CUP9P41817 ARE1YCR048W 1833 nt12.25□□□□□ -0.45
CUP9P41817 PUN1YLR414C 792 nt12.24□□□□□ -0.45
CUP9P41817 YJR018WYJR018W 363 nt12.23□□□□□ -0.45
CUP9P41817 YAL037C-BYAL037C-B 975 nt12.21□□□□□ -0.45
CUP9P41817 YOR139CYOR139C 393 nt12.13□□□□□ -0.47
CUP9P41817 YHR049C-AYHR049C-A 297 nt12.11□□□□□ -0.47
CUP9P41817 SRB2YHR041C 633 nt12.1□□□□□ -0.47
CUP9P41817 RPP2BYDR382W 333 nt12.07□□□□□ -0.48
CUP9P41817 YGR021WYGR021W 873 nt12.06□□□□□ -0.48
CUP9P41817 SSA3YBL075C 1950 nt12.06□□□□□ -0.48
CUP9P41817 YJR120WYJR120W 351 nt12.04□□□□□ -0.48
CUP9P41817 POA1YBR022W 534 nt12.04□□□□□ -0.48
CUP9P41817 NPL3YDR432W 1245 nt12.02□□□□□ -0.49
CUP9P41817 PTC2YER089C 1395 nt12.01□□□□□ -0.49
CUP9P41817 WWM1YFL010C 636 nt12□□□□□ -0.49
CUP9P41817 HOM6YJR139C 1080 nt11.99□□□□□ -0.49
CUP9P41817 MNP1YGL068W 585 nt11.93□□□□□ -0.5
CUP9P41817 YOL037CYOL037C 354 nt11.89□□□□□ -0.51
CUP9P41817 YFL021C-AYFL021C-A 855 nt11.86□□□□□ -0.51
CUP9P41817 BUD23YCR047C 828 nt11.85□□□□□ -0.51
CUP9P41817 BDH2YAL061W 1254 nt11.85□□□□□ -0.51
CUP9P41817 NAB2YGL122C 1578 nt11.84□□□□□ -0.51
CUP9P41817 RKM5YLR137W 1104 nt11.82□□□□□ -0.52
CUP9P41817 INM2YDR287W 879 nt11.79□□□□□ -0.52
CUP9P41817 LSM3YLR438C-A 270 nt11.75□□□□□ -0.53
CUP9P41817 BSC6YOL137W 1494 nt11.75□□□□□ -0.53
CUP9P41817 DAL1YIR027C 1383 nt11.73□□□□□ -0.53
CUP9P41817 FPR4YLR449W 1179 nt11.69□□□□□ -0.54
CUP9P41817 YBL100CYBL100C 315 nt11.69□□□□□ -0.54
CUP9P41817 FIS1YIL065C 468 nt11.67□□□□□ -0.54
CUP9P41817 tM(CAU)CtM(CAU)C 72 nt11.65□□□□□ -0.54
CUP9P41817 IMT4tM(CAU)E 72 nt11.65□□□□□ -0.54
CUP9P41817 IMT3tM(CAU)J3 72 nt11.65□□□□□ -0.54
CUP9P41817 IMT1tM(CAU)O1 72 nt11.65□□□□□ -0.54
CUP9P41817 IMT2tM(CAU)P 72 nt11.65□□□□□ -0.54
CUP9P41817 PHO4YFR034C 939 nt11.6□□□□□ -0.55
CUP9P41817 TRM9YML014W 840 nt11.59□□□□□ -0.55
CUP9P41817 FUN26YAL022C 1554 nt11.55□□□□□ -0.56
CUP9P41817 YLR281CYLR281C 468 nt11.55□□□□□ -0.56
CUP9P41817 PUS2YGL063W 1113 nt11.5□□□□□ -0.57
CUP9P41817 WHI5YOR083W 888 nt11.48□□□□□ -0.57
CUP9P41817 CCT6YDR188W 1641 nt11.45□□□□□ -0.58
CUP9P41817 SUF2tP(AGG)C 72 nt11.37□□□□□ -0.59
CUP9P41817 SUF10tP(AGG)N 72 nt11.37□□□□□ -0.59
CUP9P41817 ALF1YNL148C 765 nt11.37□□□□□ -0.59
CUP9P41817 SPT5YML010W 3192 nt11.36□□□□□ -0.59
CUP9P41817 YLR154C-GYLR154C-G 150 nt11.33□□□□□ -0.6
CUP9P41817 YPS1YLR120C 1710 nt11.29□□□□□ -0.6
CUP9P41817 IMP2'YIL154C 1041 nt11.29□□□□□ -0.6
CUP9P41817 YDR095CYDR095C 411 nt11.28□□□□□ -0.6
Retrieved 100 of 7,029 protein–RNA pairs in 9.9 ms