RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	MAM33	P40513	266 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	GAT1	P43574	510 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	YAR1	P46683	200 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	UBC11	P52492	156 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	PEX31	P53203	462 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	RCF2	P53721	224 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	YMR279C	Q03263	540 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	ENT5	Q03769	411 aa	Known RBP	4.26	□□□□□ -1.73
CDC48	YDL126C	TAF9	Q05027	157 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	THP3	Q12049	470 aa	Known RBP	4.26	□□□□□ -1.73
CDC48	YDL126C	RLM1	Q12224	676 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	HMS1	Q12398	434 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	PNS1	Q12412	539 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	YDR524C-B	Q3E6R4	66 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	SSA3	P09435	649 aa	Known RBP	4.26	□□□□□ -1.73
CDC48	YDL126C	IMA3	P0CW40	589 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	IMA4	P0CW41	589 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	POF1	P25576	258 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	NAM9	P27929	486 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	ACH1	P32316	526 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	SPT14	P32363	452 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	PTM1	P32857	523 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	SPC34	P36131	295 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	UTP30	P36144	274 aa	Known RBP	4.26	□□□□□ -1.73
CDC48	YDL126C	DIA4	P38705	446 aa	Predicted RBP	4.26	□□□□□ -1.73
CDC48	YDL126C	SPC97	P38863	823 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	RTS2	P40962	232 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	SWC4	P53201	476 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	ZRG17	P53735	605 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	MRPL22	P53881	309 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	EFM6	P53970	246 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	YPL062W	Q02781	134 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	SWF1	Q04629	336 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	CDC123	Q05791	360 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	COA4	Q05809	96 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	CTS2	Q06350	511 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	IMA2	Q08295	589 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	SGT1	Q08446	395 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	APC9	Q12107	265 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	YCL012C	Q8J0M4	134 aa		4.26	□□□□□ -1.73
CDC48	YDL126C	HAP2	P06774	265 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	NSP1	P14907	823 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	TCD2	P36101	447 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	YHR045W	P38775	560 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	MMF1	P40185	145 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	SEC24	P40482	926 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	ADO1	P47143	340 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	MPP6	P53725	186 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	YNL010W	P53981	241 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	YDR476C	Q03362	224 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	TRM82	Q03774	444 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	BUD22	Q04347	519 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	PEX10	Q05568	337 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	VAM3	Q12241	283 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	YCL001W-B	Q96VH2	84 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	ATP2	P00830	511 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	SCEI	P03882	235 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	MET16	P18408	261 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	CIN8	P27895	1000 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	PEX3	P28795	441 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	TKL2	P33315	681 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	AIM3	P38266	947 aa	Known RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	LEU5	P38702	357 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	ARO9	P38840	513 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	CIN1	P40987	1014 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	FKH2	P41813	862 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	MAF1	P41910	395 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	RRT5	P43607	289 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	YJL132W	P47014	750 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	YJR030C	P47101	745 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	MPS1	P54199	764 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	HXT11	P54862	567 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	PFA5	Q03289	374 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	REX4	Q08237	289 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	ENB1	Q08299	606 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	LEA1	Q08963	238 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC48	YDL126C	GPM2	Q12008	311 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	NBP2	Q12163	236 aa		4.25	□□□□□ -1.73
CDC48	YDL126C	GAL3	P13045	520 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
CDC48	YDL126C	ADY2	P25613	283 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	CWP1	P28319	239 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	ATP7	P30902	174 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	RIP-Chip
CDC48	YDL126C	ASC1	P38011	319 aa	Known RBP	4.24	□□□□□ -1.73
CDC48	YDL126C	YBL029W	P38201	376 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	YJL193W	P39542	402 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	YGR042W	P53227	271 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	YPR003C	P53394	754 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	SNO2	P53823	222 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	MTQ1	P53944	314 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	SED5	Q01590	340 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	APC4	Q04601	652 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	GAS2	Q06135	555 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	CDA2	Q06703	312 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	YOL159C	Q08300	171 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	YPR022C	Q12139	1133 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	MAS1	P10507	462 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	AMD2	P22580	549 aa		4.24	□□□□□ -1.73
CDC48	YDL126C	CNB1	P25296	175 aa		4.24	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms