RNA–Protein interactions for RNA: YDL084W

SUB2, Transcript of Component of the TREX complex required for nuclear mRNA export, yeast

Gene SUB2, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB2	YDL084W	YHR122W	P38829	231 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	EXO1	P39875	702 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	LSM4	P40070	187 aa	Known RBP	5.49	□□□□□ -1.53
SUB2	YDL084W	CDC40	P40968	455 aa	Predicted RBP	5.49	□□□□□ -1.53
SUB2	YDL084W	RPL10	P41805	221 aa	Known RBP	5.49	□□□□□ -1.53
SUB2	YDL084W	YJR030C	P47101	745 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	TAH11	P47112	604 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	YPT11	P48559	417 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	BOR1	P53838	576 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	YDR391C	Q04170	232 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	YML096W	Q04489	525 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	DAL4	Q04895	635 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	PRP11	Q07350	266 aa	Predicted RBP	5.49	□□□□□ -1.53
SUB2	YDL084W	XYL2	Q07993	356 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	FCY22	Q12119	530 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	DCP1	Q12517	231 aa	Predicted RBP	5.49	□□□□□ -1.53
SUB2	YDL084W	YOR111W	Q99210	232 aa		5.49	□□□□□ -1.53
SUB2	YDL084W	THP2	O13539	261 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	COB	P00163	385 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	AI3	P03877	415 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	ILV5	P06168	395 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	GCR1	P07261	785 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	HTS1	P07263	546 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	SPE1	P08432	466 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	PUT1	P09368	476 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	MRP13	P12686	339 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	SPO11	P23179	398 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	SUA7	P29055	345 aa	Predicted RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	VMA5	P31412	392 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	LDB7	P38210	180 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	VHC1	P38329	1120 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	ERG7	P38604	731 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	PRS3	P38689	320 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	PFS1	P38872	237 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	ERG28	P40030	148 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	LCP5	P40079	357 aa	Predicted RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	SLZ1	P40167	298 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	RFC2	P40348	353 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	PGD1	P40356	397 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	SDP1	P40479	209 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	APT1	P49435	187 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	YGR035C	P53222	116 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YTP1	P53584	459 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	NOG2	P53742	486 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	RKM2	Q03942	479 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	PEX10	Q05568	337 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YFH1	Q07540	174 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	THI72	Q08579	599 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	NBP2	Q12163	236 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	SAS5	Q99314	248 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	UTP10	P42945	1769 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	GCN2	P15442	1659 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	CDC21	P06785	304 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	DPM1	P14020	267 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	UBC8	P28263	218 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	SKG6	P32900	734 aa	Predicted RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	MDL2	P33311	773 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	LST4	P34239	828 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YPT53	P36019	220 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	TAT1	P38085	619 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YBL029W	P38201	376 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	MIP6	P38760	659 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	CHL4	P38907	458 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	FAU1	P40099	211 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YGR210C	P42942	411 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	GNA1	P43577	159 aa	Predicted RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	MTC3	P53077	123 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	FMP48	P53233	369 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	GND2	P53319	492 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YNR066C	P53752	436 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	DUS1	P53759	423 aa	Known RBP	5.48	□□□□□ -1.53
SUB2	YDL084W	YLR460C	P54007	376 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	SDH1	Q00711	640 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	ATP25	Q03153	612 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	DLT1	Q04216	342 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	TVP18	Q04767	167 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	ATG39	Q06159	398 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	SSK1	Q07084	712 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	AAD4	Q07747	329 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	TPO1	Q07824	586 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	ATX2	Q12067	313 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YPL066W	Q12194	479 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	YOR029W	Q12243	111 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	HBN1	Q96VH4	193 aa		5.48	□□□□□ -1.53
SUB2	YDL084W	NUP159	P40477	1460 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	ESP1	Q03018	1630 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	RPS4A	P0CX35	261 aa	Known RBP	5.47	□□□□□ -1.53
SUB2	YDL084W	RPS4B	P0CX36	261 aa	Known RBP	5.47	□□□□□ -1.53
SUB2	YDL084W	YCR015C	P25616	317 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	CTS1	P29029	562 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	PEX4	P29340	183 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	TRR1	P29509	319 aa	Known RBP	5.47	□□□□□ -1.53
SUB2	YDL084W	DGR2	P32330	852 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	AEP1	P32493	518 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	TMT1	P32643	299 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	IXR1	P33417	597 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	TRM2	P33753	639 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.47	□□□□□ -1.53	not detected
SUB2	YDL084W	SKT5	P34226	696 aa		5.47	□□□□□ -1.53
SUB2	YDL084W	ADD66	P36040	267 aa		5.47	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 253.9 ms