Protein–RNA interactions for Protein: P40070

LSM4, U6 snRNA-associated Sm-like protein LSm4, yeastyeast

Known RBP Predictions only

Length 187 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LSM4P40070 YML009W-BYML009W-B 477 nt17.05■□□□□ 0.32
LSM4P40070 NOP1YDL014W 984 nt16.84■□□□□ 0.29
LSM4P40070 NSR1YGR159C 1245 nt16.62■□□□□ 0.25
LSM4P40070 YKL036CYKL036C 393 nt16.04■□□□□ 0.16
LSM4P40070 YJL027CYJL027C 417 nt15.01□□□□□ -0.01
LSM4P40070 Q0297Q0297 156 nt14.99□□□□□ -0.01
LSM4P40070 SCS3YGL126W 1143 nt14.86□□□□□ -0.03
LSM4P40070 SRX1YKL086W 384 nt14.77□□□□□ -0.05
LSM4P40070 MDJ1YFL016C 1536 nt14.2□□□□□ -0.14
LSM4P40070 YCR051WYCR051W 669 nt13.94□□□□□ -0.18
LSM4P40070 SCJ1YMR214W 1134 nt13.91□□□□□ -0.18
LSM4P40070 YOL085CYOL085C 342 nt13.9□□□□□ -0.18
LSM4P40070 SSA3YBL075C 1950 nt13.67□□□□□ -0.22
LSM4P40070 PKP1YIL042C 1185 nt13.53□□□□□ -0.24
LSM4P40070 ATS1YAL020C 1002 nt13.45□□□□□ -0.26
LSM4P40070 RPP1BYDL130W 321 nt13.42□□□□□ -0.26
LSM4P40070 TRN1tP(UGG)A 72 nt13.05□□□□□ -0.32
LSM4P40070 SUF9tP(UGG)F 72 nt13.05□□□□□ -0.32
LSM4P40070 SUF8tP(UGG)H 72 nt13.05□□□□□ -0.32
LSM4P40070 tP(UGG)LtP(UGG)L 72 nt13.05□□□□□ -0.32
LSM4P40070 SUF7tP(UGG)M 72 nt13.05□□□□□ -0.32
LSM4P40070 tP(UGG)N1tP(UGG)N1 72 nt13.05□□□□□ -0.32
LSM4P40070 tP(UGG)N2tP(UGG)N2 72 nt13.05□□□□□ -0.32
LSM4P40070 tP(UGG)O1tP(UGG)O1 72 nt13.05□□□□□ -0.32
LSM4P40070 SUF11tP(UGG)O2 72 nt13.05□□□□□ -0.32
LSM4P40070 DBP2YNL112W 1641 nt12.86□□□□□ -0.35
LSM4P40070 CCC1YLR220W 969 nt12.8□□□□□ -0.36
LSM4P40070 PET122YER153C 765 nt12.73□□□□□ -0.37
LSM4P40070 SCR1SCR1 522 nt12.7□□□□□ -0.38
LSM4P40070 RTC3YHR087W 336 nt12.51□□□□□ -0.41
LSM4P40070 tP(UGG)O3tP(UGG)O3 72 nt12.5□□□□□ -0.41
LSM4P40070 PST2YDR032C 597 nt12.42□□□□□ -0.42
LSM4P40070 RRN5YLR141W 1092 nt12.42□□□□□ -0.42
LSM4P40070 YBR190WYBR190W 312 nt12.35□□□□□ -0.43
LSM4P40070 RSB1YOR049C 1065 nt12.25□□□□□ -0.45
LSM4P40070 YER088W-BYER088W-B 147 nt12.19□□□□□ -0.46
LSM4P40070 YDJ1YNL064C 1230 nt12.13□□□□□ -0.47
LSM4P40070 YKL097CYKL097C 411 nt12.12□□□□□ -0.47
LSM4P40070 RVS167YDR388W 1449 nt12.1□□□□□ -0.47
LSM4P40070 PUT4YOR348C 1884 nt11.9□□□□□ -0.5
LSM4P40070 SHR5YOL110W 714 nt11.86□□□□□ -0.51
LSM4P40070 SSA4YER103W 1929 nt11.76□□□□□ -0.53
LSM4P40070 SHU1YHL006C 453 nt11.75□□□□□ -0.53
LSM4P40070 GAR1YHR089C 618 nt11.67□□□□□ -0.54
LSM4P40070 SPT5YML010W 3192 nt11.62□□□□□ -0.55
LSM4P40070 YOR139CYOR139C 393 nt11.6□□□□□ -0.55
LSM4P40070 PAC11YDR488C 1602 nt11.53□□□□□ -0.56
LSM4P40070 POA1YBR022W 534 nt11.43□□□□□ -0.58
LSM4P40070 BDF1YLR399C 2061 nt11.4□□□□□ -0.58
LSM4P40070 BSC6YOL137W 1494 nt11.4□□□□□ -0.58
LSM4P40070 ARE1YCR048W 1833 nt11.37□□□□□ -0.59
LSM4P40070 YAL037C-BYAL037C-B 975 nt11.35□□□□□ -0.59
LSM4P40070 NVJ2YPR091C 2313 nt11.31□□□□□ -0.6
LSM4P40070 TIR1YER011W 765 nt11.3□□□□□ -0.6
LSM4P40070 NPL3YDR432W 1245 nt11.29□□□□□ -0.6
LSM4P40070 DEP1YAL013W 1218 nt11.25□□□□□ -0.61
LSM4P40070 TAT1YBR069C 1860 nt11.24□□□□□ -0.61
LSM4P40070 YHR049C-AYHR049C-A 297 nt11.24□□□□□ -0.61
LSM4P40070 YNL208WYNL208W 600 nt11.21□□□□□ -0.61
LSM4P40070 URN1YPR152C 1398 nt11.17□□□□□ -0.62
LSM4P40070 tM(CAU)CtM(CAU)C 72 nt11.12□□□□□ -0.63
LSM4P40070 IMT4tM(CAU)E 72 nt11.12□□□□□ -0.63
LSM4P40070 IMT3tM(CAU)J3 72 nt11.12□□□□□ -0.63
LSM4P40070 IMT1tM(CAU)O1 72 nt11.12□□□□□ -0.63
LSM4P40070 IMT2tM(CAU)P 72 nt11.12□□□□□ -0.63
LSM4P40070 RPN10YHR200W 807 nt11.11□□□□□ -0.63
LSM4P40070 SAH1YER043C 1350 nt11.1□□□□□ -0.63
LSM4P40070 SSA1YAL005C 1929 nt11.07□□□□□ -0.64
LSM4P40070 YOL037CYOL037C 354 nt11.04□□□□□ -0.64
LSM4P40070 SRB2YHR041C 633 nt11.01□□□□□ -0.65
LSM4P40070 HOM6YJR139C 1080 nt11.01□□□□□ -0.65
LSM4P40070 YGR021WYGR021W 873 nt10.99□□□□□ -0.65
LSM4P40070 OPI9YLR338W 858 nt10.97□□□□□ -0.65
LSM4P40070 MNP1YGL068W 585 nt10.96□□□□□ -0.65
LSM4P40070 BUD23YCR047C 828 nt10.9□□□□□ -0.66
LSM4P40070 FPS1YLL043W 2010 nt10.89□□□□□ -0.67
LSM4P40070 WWM1YFL010C 636 nt10.88□□□□□ -0.67
LSM4P40070 MOT3YMR070W 1473 nt10.87□□□□□ -0.67
LSM4P40070 RKM5YLR137W 1104 nt10.83□□□□□ -0.68
LSM4P40070 MEP2YNL142W 1500 nt10.82□□□□□ -0.68
LSM4P40070 PUS2YGL063W 1113 nt10.77□□□□□ -0.69
LSM4P40070 YLR281CYLR281C 468 nt10.77□□□□□ -0.69
LSM4P40070 YFL021C-AYFL021C-A 855 nt10.73□□□□□ -0.69
LSM4P40070 YJR120WYJR120W 351 nt10.73□□□□□ -0.69
LSM4P40070 MRPL8YJL063C 717 nt10.7□□□□□ -0.7
LSM4P40070 YJR018WYJR018W 363 nt10.7□□□□□ -0.7
LSM4P40070 PUN1YLR414C 792 nt10.66□□□□□ -0.7
LSM4P40070 PTC2YER089C 1395 nt10.64□□□□□ -0.71
LSM4P40070 NAB2YGL122C 1578 nt10.63□□□□□ -0.71
LSM4P40070 WHI5YOR083W 888 nt10.62□□□□□ -0.71
LSM4P40070 YBR220CYBR220C 1683 nt10.6□□□□□ -0.71
LSM4P40070 RPP2BYDR382W 333 nt10.59□□□□□ -0.71
LSM4P40070 DCW1YKL046C 1350 nt10.59□□□□□ -0.71
LSM4P40070 BDH2YAL061W 1254 nt10.53□□□□□ -0.72
LSM4P40070 LSM3YLR438C-A 270 nt10.53□□□□□ -0.72
LSM4P40070 PCH2YBR186W 1695 nt10.51□□□□□ -0.73
LSM4P40070 YPR011CYPR011C 981 nt10.51□□□□□ -0.73
LSM4P40070 YMR090WYMR090W 684 nt10.5□□□□□ -0.73
LSM4P40070 GUT2YIL155C 1950 nt10.49□□□□□ -0.73
LSM4P40070 FMP45YDL222C 930 nt10.47□□□□□ -0.73
Retrieved 100 of 7,029 protein–RNA pairs in 13.3 ms