RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	HRT3	Q12347	344 aa		3.18	□□□□□ -1.9
RUB1	YDR139C	MTR10	Q99189	972 aa		3.18	□□□□□ -1.9
RUB1	YDR139C	ADE4	P04046	510 aa	Known RBP	3.17	□□□□□ -1.9
RUB1	YDR139C	CLN3	P13365	580 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	ISY1	P21374	235 aa	Predicted RBP	3.17	□□□□□ -1.9
RUB1	YDR139C	NIP1	P32497	812 aa	Known RBP	3.17	□□□□□ -1.9
RUB1	YDR139C	MRPL4	P36517	319 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	SWD3	P38123	315 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	MSG5	P38590	489 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	ZIM17	P42844	174 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	SFH5	P47008	294 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	TCB2	P48231	1178 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	TOM22	P49334	152 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	RHO5	P53879	331 aa	Known RBP	3.17	□□□□□ -1.9
RUB1	YDR139C	BCH1	Q05029	724 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	YLR345W	Q06137	509 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	SRL2	Q12020	392 aa		3.17	□□□□□ -1.9
RUB1	YDR139C	NFT1	P0CE68	1218 aa		3.16	□□□□□ -1.9
RUB1	YDR139C	RPS8A	P0CX39	200 aa	Known RBP	3.16	□□□□□ -1.9
RUB1	YDR139C	RPS8B	P0CX40	200 aa	Known RBP	3.16	□□□□□ -1.9
RUB1	YDR139C	RAD57	P25301	460 aa		3.16	□□□□□ -1.9
RUB1	YDR139C	POP5	P28005	173 aa		3.16	□□□□□ -1.9
RUB1	YDR139C	YBR056W	P38081	501 aa		3.16	□□□□□ -1.9
RUB1	YDR139C	PEX25	Q02969	394 aa		3.16	□□□□□ -1.9
RUB1	YDR139C	URH1	Q04179	340 aa		3.16	□□□□□ -1.9
RUB1	YDR139C	AIM32	Q04689	311 aa		3.16	□□□□□ -1.9
RUB1	YDR139C	ADH2	P00331	348 aa	Known RBP	3.15	□□□□□ -1.91
RUB1	YDR139C	CYC3	P06182	269 aa		3.15	□□□□□ -1.91
RUB1	YDR139C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
RUB1	YDR139C	RVS161	P25343	265 aa	Known RBP	3.15	□□□□□ -1.91
RUB1	YDR139C	KAR9	P32526	644 aa		3.15	□□□□□ -1.91
RUB1	YDR139C	JLP2	P40206	208 aa		3.15	□□□□□ -1.91
RUB1	YDR139C	RPN9	Q04062	393 aa	Known RBP	3.15	□□□□□ -1.91
RUB1	YDR139C	AEP3	Q12089	606 aa		3.15	□□□□□ -1.91
RUB1	YDR139C	TPT1	Q12272	230 aa	Known RBP	3.15	□□□□□ -1.91
RUB1	YDR139C	SNU66	Q12420	587 aa	Predicted RBP	3.15	□□□□□ -1.91
RUB1	YDR139C	COX3	P00420	269 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	IMA3	P0CW40	589 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	IMA4	P0CW41	589 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	CHK1	P38147	527 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	OLA1	P38219	394 aa	Known RBP	3.14	□□□□□ -1.91
RUB1	YDR139C	SRP72	P38688	640 aa	Known RBP	3.14	□□□□□ -1.91
RUB1	YDR139C	SER3	P40054	469 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	GAT2	P40209	560 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	VHS2	P40463	436 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	YPS6	P40583	537 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	ADD37	Q03233	198 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	RRP9	Q06506	573 aa	Known RBP	3.14	□□□□□ -1.91
RUB1	YDR139C	IRC25	Q07951	179 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	IMA2	Q08295	589 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	FDH1	Q08911	376 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	RUP1	Q12242	671 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	RBD2	Q12270	262 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	YRM1	Q12340	786 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	SMC6	Q12749	1114 aa		3.14	□□□□□ -1.91
RUB1	YDR139C	NOP1	P15646	327 aa	Known RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	RRP1	P35178	278 aa	Predicted RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	HEL1	P36113	551 aa		3.13	□□□□□ -1.91
RUB1	YDR139C	ASC1	P38011	319 aa	Known RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	ATP3	P38077	311 aa	Known RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	ZTA1	P38230	334 aa	Known RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	YGL039W	P53183	348 aa	Known RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	YGR111W	P53265	400 aa		3.13	□□□□□ -1.91
RUB1	YDR139C	MMT1	Q03218	510 aa		3.13	□□□□□ -1.91
RUB1	YDR139C	SNT309	Q06091	175 aa	Predicted RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	MHR1	Q06630	226 aa		3.13	□□□□□ -1.91
RUB1	YDR139C	NDE2	Q07500	545 aa		3.13	□□□□□ -1.91
RUB1	YDR139C	TMC1	Q08422	150 aa	Predicted RBP	3.13	□□□□□ -1.91
RUB1	YDR139C	RAX1	Q08760	435 aa		3.13	□□□□□ -1.91
RUB1	YDR139C	ARO3	P14843	370 aa	Known RBP	3.12	□□□□□ -1.91
RUB1	YDR139C	YCL068C	P25593	260 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	COX14	P39103	70 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	MDE1	P47095	244 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	SHY1	P53266	389 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	MTQ1	P53944	314 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	CIK1	Q01649	594 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	STD1	Q02794	444 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	PRP42	Q03776	544 aa	Known RBP	3.12	□□□□□ -1.91
RUB1	YDR139C	YMR027W	Q04371	470 aa		3.12	□□□□□ -1.91
RUB1	YDR139C	WTM1	Q12363	437 aa	Known RBP	3.12	□□□□□ -1.91
RUB1	YDR139C	CYS4	P32582	507 aa	Known RBP	3.11	□□□□□ -1.91
RUB1	YDR139C	SPR1	P32603	445 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	VMA8	P32610	256 aa	Known RBP	3.11	□□□□□ -1.91
RUB1	YDR139C	LTV1	P34078	463 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	PXA2	P34230	853 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	YIL029C	P40538	142 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	BRO1	P48582	844 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	NUP116	Q02630	1113 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	CCE1	Q03702	353 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	CEX1	Q12453	761 aa		3.11	□□□□□ -1.91
RUB1	YDR139C	NAM2	P11325	894 aa		3.1	□□□□□ -1.91
RUB1	YDR139C	HSP104	P31539	908 aa	Known RBP	3.1	□□□□□ -1.91
RUB1	YDR139C	RIM1	P32445	135 aa	Known RBP	3.1	□□□□□ -1.91
RUB1	YDR139C	SBE22	P38814	852 aa		3.1	□□□□□ -1.91
RUB1	YDR139C	STN1	P38960	494 aa		3.1	□□□□□ -1.91
RUB1	YDR139C	YER079W	P40052	210 aa	Known RBP	3.1	□□□□□ -1.91
RUB1	YDR139C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
RUB1	YDR139C	YML6	P51998	286 aa		3.1	□□□□□ -1.91
RUB1	YDR139C	YLR152C	P54072	576 aa		3.1	□□□□□ -1.91
RUB1	YDR139C	YLR456W	Q06199	204 aa		3.1	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms