RNA–Protein interactions for RNA: YDR120C

TRM1, Transcript of tRNA methyltransferase, yeast

Gene TRM1, Length 1,713 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM1	YDR120C	ECM30	Q06673	1274 aa		4.25	□□□□□ -1.73
TRM1	YDR120C	YLR112W	Q12130	139 aa		4.25	□□□□□ -1.73
TRM1	YDR120C	RLM1	Q12224	676 aa		4.25	□□□□□ -1.73
TRM1	YDR120C	GRX6	Q12438	231 aa		4.25	□□□□□ -1.73
TRM1	YDR120C	SNF2	P22082	1703 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	PDA1	P16387	420 aa	Known RBP	4.24	□□□□□ -1.73
TRM1	YDR120C	ART10	P18634	518 aa	Known RBP	4.24	□□□□□ -1.73
TRM1	YDR120C	PTP1	P25044	335 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	ERG3	P32353	365 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	NET1	P47035	1189 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	PYK2	P52489	506 aa	Known RBP	4.24	□□□□□ -1.73
TRM1	YDR120C	JJJ1	P53863	590 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	STP1	Q00947	519 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	ATX2	Q12067	313 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	SIR4	P11978	1358 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	TOM1	Q03280	3268 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	YIL177C	P40434	1758 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	YJL225C	P40889	1758 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	YPT1	P01123	206 aa	Known RBP	4.24	□□□□□ -1.73
TRM1	YDR120C	RPB8	P20436	146 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	AIM17	P23180	465 aa	Known RBP	4.24	□□□□□ -1.73
TRM1	YDR120C	MTR2	P34232	184 aa	Known RBP	4.24	□□□□□ -1.73
TRM1	YDR120C	STV1	P37296	890 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	SCO2	P38072	301 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	PKP2	P53170	491 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	FIN1	Q03898	291 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	RTN2	Q12443	393 aa		4.24	□□□□□ -1.73
TRM1	YDR120C	YPR089W	O13585	888 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	SNF3	P10870	884 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	PRD1	P25375	712 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	MRE11	P32829	692 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	RPL32	P38061	130 aa	Known RBP	4.23	□□□□□ -1.73
TRM1	YDR120C	YMR124W	P39523	943 aa	Known RBP	4.23	□□□□□ -1.73
TRM1	YDR120C	VRG4	P40107	337 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	GAT1	P43574	510 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	VTC2	P43585	828 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	PET130	P47065	347 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	YDL218W	Q07629	317 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	GSH2	Q08220	491 aa		4.23	□□□□□ -1.73
TRM1	YDR120C	RPO41	P13433	1351 aa	Known RBP	4.22	□□□□□ -1.73
TRM1	YDR120C	FUR1	P18562	216 aa	Known RBP	4.22	□□□□□ -1.73
TRM1	YDR120C	YCP4	P25349	247 aa	Known RBP	4.22	□□□□□ -1.73
TRM1	YDR120C	GPI10	P30777	616 aa		4.22	□□□□□ -1.73
TRM1	YDR120C	VID24	P38263	362 aa		4.22	□□□□□ -1.73
TRM1	YDR120C	CIN4	P39110	191 aa		4.22	□□□□□ -1.73
TRM1	YDR120C	PHO90	P39535	881 aa		4.22	□□□□□ -1.73
TRM1	YDR120C	CTL1	Q03220	320 aa	Known RBP	4.22	□□□□□ -1.73
TRM1	YDR120C	MRD1	Q06106	887 aa	Known RBP	4.22	□□□□□ -1.73
TRM1	YDR120C	RIM20	Q12033	661 aa		4.22	□□□□□ -1.73
TRM1	YDR120C	RRG1	Q12167	365 aa	Predicted RBP	4.22	□□□□□ -1.73
TRM1	YDR120C	HER1	Q12276	1246 aa		4.22	□□□□□ -1.73
TRM1	YDR120C	CBP1	P07252	654 aa		4.21	□□□□□ -1.73
TRM1	YDR120C	NFU1	P32860	256 aa		4.21	□□□□□ -1.73
TRM1	YDR120C	CST26	P38226	397 aa		4.21	□□□□□ -1.73
TRM1	YDR120C	SMF1	P38925	575 aa		4.21	□□□□□ -1.73
TRM1	YDR120C	YDR239C	Q03780	787 aa		4.21	□□□□□ -1.73
TRM1	YDR120C	ATG29	Q12092	213 aa		4.21	□□□□□ -1.73
TRM1	YDR120C	YML133C	Q03099	1374 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	YLL067C	Q07888	1374 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	YLL066C	Q99208	1374 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	ELO2	P25358	347 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	MSR1	P38714	643 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	IZH1	Q03419	316 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	MRPL1	Q04599	285 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	COQ9	Q05779	260 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	ECI1	Q05871	280 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	CDC45	Q08032	650 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	NCE102	Q12207	173 aa	RIP-Chip data	4.21	□□□□□ -1.74	not detected
TRM1	YDR120C	SFI1	Q12369	946 aa		4.21	□□□□□ -1.74
TRM1	YDR120C	MHP1	P43638	1398 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	RPL42A	P0CX27	106 aa	Known RBP	4.2	□□□□□ -1.74
TRM1	YDR120C	RPL42B	P0CX28	106 aa	Known RBP	4.2	□□□□□ -1.74
TRM1	YDR120C	RKM3	P38222	552 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	MUM2	P38236	366 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	LSM5	P40089	93 aa	Known RBP	4.2	□□□□□ -1.74
TRM1	YDR120C	TWF1	P53250	332 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	SOL4	P53315	255 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	YGR250C	P53316	781 aa	Known RBP	4.2	□□□□□ -1.74
TRM1	YDR120C	NUP100	Q02629	959 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	GIR2	Q03768	265 aa	Predicted RBP	4.2	□□□□□ -1.74
TRM1	YDR120C	RDR1	Q08904	546 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
TRM1	YDR120C	SEC39	Q12745	709 aa		4.2	□□□□□ -1.74
TRM1	YDR120C	RIM15	P43565	1770 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	YME1	P32795	747 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	SEC66	P33754	206 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	CMC1	P36064	111 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	ROT2	P38138	954 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	GND1	P38720	489 aa	Known RBP	4.19	□□□□□ -1.74
TRM1	YDR120C	PCI8	P40512	444 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	YGR126W	P53274	230 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	YNL234W	P53857	426 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	EKI1	Q03764	534 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	YMR155W	Q03795	547 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	YOL159C-A	Q3E769	90 aa		4.19	□□□□□ -1.74
TRM1	YDR120C	OSM1	P21375	501 aa	Known RBP	4.18	□□□□□ -1.74
TRM1	YDR120C	MGM1	P32266	881 aa		4.18	□□□□□ -1.74
TRM1	YDR120C	PMT1	P33775	817 aa		4.18	□□□□□ -1.74
TRM1	YDR120C	YPK3	P38070	525 aa		4.18	□□□□□ -1.74
TRM1	YDR120C	PCL6	P40038	420 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms