RNA–Protein interactions for RNA: YHR040W

BCD1, Essential protein required for the accumulation of box C/D snoRNA, yeastyeast

Gene BCD1, Length 1,101 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
BCD1YHR040W MTG1Q03151 367 aaPredicted RBP3.59□□□□□ -1.83
BCD1YHR040W YHM2Q04013 314 aa3.59□□□□□ -1.83
BCD1YHR040W URH1Q04179 340 aa3.59□□□□□ -1.83
BCD1YHR040W WHI4Q07655 649 aaKnown RBP3.59□□□□□ -1.83
BCD1YHR040W AIM41Q12032 185 aa3.59□□□□□ -1.83
BCD1YHR040W KCS1Q12494 1050 aa3.59□□□□□ -1.83
BCD1YHR040W YBL111CQ3E7Y5 667 aa3.59□□□□□ -1.83
BCD1YHR040W CYC1P00044 109 aaPredicted RBP3.58□□□□□ -1.84
BCD1YHR040W RPS21AP0C0V8 87 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W ADH4P10127 382 aa3.58□□□□□ -1.84
BCD1YHR040W CMP2P14747 604 aa3.58□□□□□ -1.84
BCD1YHR040W KRS1P15180 591 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W TUP1P16649 713 aa3.58□□□□□ -1.84
BCD1YHR040W TKL1P23254 680 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W MRPL25P23369 157 aa3.58□□□□□ -1.84
BCD1YHR040W CDC48P25694 835 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W RME1P32338 300 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W DPH2P32461 534 aa3.58□□□□□ -1.84
BCD1YHR040W NGG1P32494 702 aa3.58□□□□□ -1.84
BCD1YHR040W SKG6P32900 734 aaPredicted RBP3.58□□□□□ -1.84
BCD1YHR040W BUD2P33314 1104 aa3.58□□□□□ -1.84
BCD1YHR040W LOS1P33418 1100 aaPredicted RBP3.58□□□□□ -1.84
BCD1YHR040W NUP120P35729 1037 aa3.58□□□□□ -1.84
BCD1YHR040W TIF5P38431 405 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W SET5P38890 526 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W UBP5P39944 805 aa3.58□□□□□ -1.84
BCD1YHR040W YEL025CP39991 1188 aa3.58□□□□□ -1.84
BCD1YHR040W YER158CP40095 573 aa3.58□□□□□ -1.84
BCD1YHR040W LCB2P40970 561 aa3.58□□□□□ -1.84
BCD1YHR040W CTK3P46963 296 aaPredicted RBP3.58□□□□□ -1.84
BCD1YHR040W BNA2P47125 453 aa3.58□□□□□ -1.84
BCD1YHR040W ASK10P48361 1146 aa3.58□□□□□ -1.84
BCD1YHR040W PUS4P48567 403 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W RNR4P49723 345 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W HOP2P53187 214 aa3.58□□□□□ -1.84
BCD1YHR040W YGR111WP53265 400 aa3.58□□□□□ -1.84
BCD1YHR040W DIP5P53388 608 aa3.58□□□□□ -1.84
BCD1YHR040W HOL1P53389 586 aa3.58□□□□□ -1.84
BCD1YHR040W YNL247WP53852 767 aaKnown RBP3.58□□□□□ -1.84
BCD1YHR040W TEP1P53916 434 aa3.58□□□□□ -1.84
BCD1YHR040W SHR3Q02774 210 aa3.58□□□□□ -1.84
BCD1YHR040W YDL057WQ07379 328 aa3.58□□□□□ -1.84
BCD1YHR040W GRC3Q07845 632 aa3.58□□□□□ -1.84
BCD1YHR040W MDM38Q08179 573 aa3.58□□□□□ -1.84
BCD1YHR040W CIR2Q08822 631 aa3.58□□□□□ -1.84
BCD1YHR040W TAF10Q12030 206 aa3.58□□□□□ -1.84
BCD1YHR040W TY3A-GQ12173 290 aa3.58□□□□□ -1.84
BCD1YHR040W ARP7Q12406 477 aa3.58□□□□□ -1.84
BCD1YHR040W TY3A-IQ99219 290 aa3.58□□□□□ -1.84
BCD1YHR040W YLR278CQ05854 1341 aa3.58□□□□□ -1.84
BCD1YHR040W VPS13Q07878 3144 aa3.57□□□□□ -1.84
BCD1YHR040W ERG11P10614 530 aa3.57□□□□□ -1.84
BCD1YHR040W SAM1P10659 382 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W RNA1P11745 407 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W PRE10P21242 288 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
BCD1YHR040W ILV6P25605 309 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W PAP1P29468 568 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W PEX5P35056 612 aa3.57□□□□□ -1.84
BCD1YHR040W UBP11P36026 717 aa3.57□□□□□ -1.84
BCD1YHR040W SHM2P37291 469 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W MUM2P38236 366 aa3.57□□□□□ -1.84
BCD1YHR040W RRT2P38332 387 aa3.57□□□□□ -1.84
BCD1YHR040W MMS21P38632 267 aa3.57□□□□□ -1.84
BCD1YHR040W RIX1P38883 763 aaPredicted RBP3.57□□□□□ -1.84
BCD1YHR040W REV7P38927 245 aa3.57□□□□□ -1.84
BCD1YHR040W SAW1P39735 261 aa3.57□□□□□ -1.84
BCD1YHR040W NOP16P40007 231 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W KAP123P40069 1113 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W LCP5P40079 357 aaPredicted RBP3.57□□□□□ -1.84
BCD1YHR040W DSN1P40568 576 aa3.57□□□□□ -1.84
BCD1YHR040W YJR079WP47126 109 aa3.57□□□□□ -1.84
BCD1YHR040W HSH155P49955 971 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W TAD1P53065 400 aa3.57□□□□□ -1.84
BCD1YHR040W CUL3P53202 744 aa3.57□□□□□ -1.84
BCD1YHR040W RTT102P53330 157 aa3.57□□□□□ -1.84
BCD1YHR040W CPR6P53691 371 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W NOG2P53742 486 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W MEH1Q02205 184 aa3.57□□□□□ -1.84
BCD1YHR040W UTP6Q02354 440 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W ECM7Q06200 448 aa3.57□□□□□ -1.84
BCD1YHR040W YLR352WQ06479 807 aa3.57□□□□□ -1.84
BCD1YHR040W IWR1Q07532 353 aaPredicted RBP3.57□□□□□ -1.84
BCD1YHR040W VHS3Q08438 674 aa3.57□□□□□ -1.84
BCD1YHR040W VTS1Q08831 523 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
BCD1YHR040W CFT2Q12102 859 aaPredicted RBP3.57□□□□□ -1.84
BCD1YHR040W SGT2Q12118 346 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W YDL177CQ12257 170 aa3.57□□□□□ -1.84
BCD1YHR040W SCM3Q12334 223 aa3.57□□□□□ -1.84
BCD1YHR040W GIS3Q12418 502 aa3.57□□□□□ -1.84
BCD1YHR040W NOP56Q12460 504 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
BCD1YHR040W RPS21BQ3E754 87 aaKnown RBP3.57□□□□□ -1.84
BCD1YHR040W JIP3O13555 125 aa3.56□□□□□ -1.84
BCD1YHR040W ADE3P07245 946 aaKnown RBP3.56□□□□□ -1.84
BCD1YHR040W FBP1P09201 348 aa3.56□□□□□ -1.84
BCD1YHR040W TUB3P09734 445 aaKnown RBP3.56□□□□□ -1.84
BCD1YHR040W PHO3P24031 467 aa3.56□□□□□ -1.84
BCD1YHR040W RNQ1P25367 405 aa3.56□□□□□ -1.84
BCD1YHR040W EFT1P32324 842 aaKnown RBP3.56□□□□□ -1.84
BCD1YHR040W RPC82P32349 654 aa3.56□□□□□ -1.84
BCD1YHR040W UTR4P32626 227 aa3.56□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 55.8 ms