Protein–RNA interactions for Protein: Q07878

VPS13, Vacuolar protein sorting-associated protein 13, yeastyeast

Predictions only

Length 3,144 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS13Q07878 YML009W-BYML009W-B 477 nt22.61■■□□□ 1.21
VPS13Q07878 NOP1YDL014W 984 nt21.86■■□□□ 1.09
VPS13Q07878 NSR1YGR159C 1245 nt21.33■■□□□ 1.01
VPS13Q07878 YKL036CYKL036C 393 nt21.28■■□□□ 1
VPS13Q07878 YJL027CYJL027C 417 nt20.07■□□□□ 0.8
VPS13Q07878 SCS3YGL126W 1143 nt20■□□□□ 0.79
VPS13Q07878 Q0297Q0297 156 nt19.57■□□□□ 0.72
VPS13Q07878 SRX1YKL086W 384 nt19.56■□□□□ 0.72
VPS13Q07878 MDJ1YFL016C 1536 nt18.51■□□□□ 0.55
VPS13Q07878 YCR051WYCR051W 669 nt18.49■□□□□ 0.55
VPS13Q07878 SCJ1YMR214W 1134 nt18.46■□□□□ 0.55
VPS13Q07878 YOL085CYOL085C 342 nt18.33■□□□□ 0.53
VPS13Q07878 PKP1YIL042C 1185 nt18.32■□□□□ 0.52
VPS13Q07878 ATS1YAL020C 1002 nt18.05■□□□□ 0.48
VPS13Q07878 RPP1BYDL130W 321 nt17.65■□□□□ 0.42
VPS13Q07878 TRN1tP(UGG)A 72 nt17.17■□□□□ 0.34
VPS13Q07878 SUF9tP(UGG)F 72 nt17.17■□□□□ 0.34
VPS13Q07878 SUF8tP(UGG)H 72 nt17.17■□□□□ 0.34
VPS13Q07878 tP(UGG)LtP(UGG)L 72 nt17.17■□□□□ 0.34
VPS13Q07878 SUF7tP(UGG)M 72 nt17.17■□□□□ 0.34
VPS13Q07878 tP(UGG)N1tP(UGG)N1 72 nt17.17■□□□□ 0.34
VPS13Q07878 tP(UGG)N2tP(UGG)N2 72 nt17.17■□□□□ 0.34
VPS13Q07878 tP(UGG)O1tP(UGG)O1 72 nt17.17■□□□□ 0.34
VPS13Q07878 SUF11tP(UGG)O2 72 nt17.17■□□□□ 0.34
VPS13Q07878 RTC3YHR087W 336 nt17.12■□□□□ 0.33
VPS13Q07878 CCC1YLR220W 969 nt17.03■□□□□ 0.32
VPS13Q07878 PET122YER153C 765 nt16.95■□□□□ 0.3
VPS13Q07878 DBP2YNL112W 1641 nt16.94■□□□□ 0.3
VPS13Q07878 SCR1SCR1 522 nt16.83■□□□□ 0.28
VPS13Q07878 tP(UGG)O3tP(UGG)O3 72 nt16.53■□□□□ 0.24
VPS13Q07878 PST2YDR032C 597 nt16.5■□□□□ 0.23
VPS13Q07878 RSB1YOR049C 1065 nt16.47■□□□□ 0.23
VPS13Q07878 RRN5YLR141W 1092 nt16.45■□□□□ 0.22
VPS13Q07878 YKL097CYKL097C 411 nt16.27■□□□□ 0.19
VPS13Q07878 YER088W-BYER088W-B 147 nt16.21■□□□□ 0.19
VPS13Q07878 SHU1YHL006C 453 nt15.74■□□□□ 0.11
VPS13Q07878 YOR139CYOR139C 393 nt15.69■□□□□ 0.1
VPS13Q07878 RVS167YDR388W 1449 nt15.68■□□□□ 0.1
VPS13Q07878 YDJ1YNL064C 1230 nt15.6■□□□□ 0.09
VPS13Q07878 SHR5YOL110W 714 nt15.55■□□□□ 0.08
VPS13Q07878 YAL037C-BYAL037C-B 975 nt15.53■□□□□ 0.08
VPS13Q07878 GAR1YHR089C 618 nt15.46■□□□□ 0.07
VPS13Q07878 NPL3YDR432W 1245 nt15.26■□□□□ 0.03
VPS13Q07878 YBR190WYBR190W 312 nt15.22■□□□□ 0.03
VPS13Q07878 DEP1YAL013W 1218 nt14.97□□□□□ -0.01
VPS13Q07878 MNP1YGL068W 585 nt14.84□□□□□ -0.03
VPS13Q07878 MOT3YMR070W 1473 nt14.82□□□□□ -0.04
VPS13Q07878 tM(CAU)CtM(CAU)C 72 nt14.79□□□□□ -0.04
VPS13Q07878 IMT4tM(CAU)E 72 nt14.79□□□□□ -0.04
VPS13Q07878 IMT3tM(CAU)J3 72 nt14.79□□□□□ -0.04
VPS13Q07878 IMT1tM(CAU)O1 72 nt14.79□□□□□ -0.04
VPS13Q07878 IMT2tM(CAU)P 72 nt14.79□□□□□ -0.04
VPS13Q07878 TIR1YER011W 765 nt14.77□□□□□ -0.05
VPS13Q07878 SSA1YAL005C 1929 nt14.72□□□□□ -0.05
VPS13Q07878 BSC6YOL137W 1494 nt14.71□□□□□ -0.05
VPS13Q07878 SRB2YHR041C 633 nt14.71□□□□□ -0.05
VPS13Q07878 URN1YPR152C 1398 nt14.63□□□□□ -0.07
VPS13Q07878 RPN10YHR200W 807 nt14.63□□□□□ -0.07
VPS13Q07878 HOM6YJR139C 1080 nt14.62□□□□□ -0.07
VPS13Q07878 PUS2YGL063W 1113 nt14.58□□□□□ -0.08
VPS13Q07878 YNL208WYNL208W 600 nt14.55□□□□□ -0.08
VPS13Q07878 SSA3YBL075C 1950 nt14.5□□□□□ -0.09
VPS13Q07878 UBX6YJL048C 1191 nt14.5□□□□□ -0.09
VPS13Q07878 YOL037CYOL037C 354 nt14.5□□□□□ -0.09
VPS13Q07878 YGR021WYGR021W 873 nt14.46□□□□□ -0.1
VPS13Q07878 WWM1YFL010C 636 nt14.43□□□□□ -0.1
VPS13Q07878 MRPL8YJL063C 717 nt14.41□□□□□ -0.1
VPS13Q07878 YLR281CYLR281C 468 nt14.36□□□□□ -0.11
VPS13Q07878 YFL015W-AYFL015W-A 318 nt14.27□□□□□ -0.13
VPS13Q07878 YLR236CYLR236C 324 nt14.21□□□□□ -0.14
VPS13Q07878 YPR011CYPR011C 981 nt14.19□□□□□ -0.14
VPS13Q07878 WHI5YOR083W 888 nt14.15□□□□□ -0.14
VPS13Q07878 RKM5YLR137W 1104 nt14.12□□□□□ -0.15
VPS13Q07878 DSK2YMR276W 1122 nt14.1□□□□□ -0.15
VPS13Q07878 FMP45YDL222C 930 nt14.05□□□□□ -0.16
VPS13Q07878 YEL076C-AYEL076C-A 651 nt14.04□□□□□ -0.16
VPS13Q07878 YEL076CYEL076C 651 nt14.04□□□□□ -0.16
VPS13Q07878 SBA1YKL117W 651 nt14.04□□□□□ -0.16
VPS13Q07878 YLR464WYLR464W 651 nt14.04□□□□□ -0.16
VPS13Q07878 YFL021C-AYFL021C-A 855 nt13.99□□□□□ -0.17
VPS13Q07878 ADO1YJR105W 1023 nt13.98□□□□□ -0.17
VPS13Q07878 OPI9YLR338W 858 nt13.95□□□□□ -0.18
VPS13Q07878 YJR018WYJR018W 363 nt13.93□□□□□ -0.18
VPS13Q07878 SPP1YPL138C 1062 nt13.93□□□□□ -0.18
VPS13Q07878 ARE1YCR048W 1833 nt13.92□□□□□ -0.18
VPS13Q07878 YDR094WYDR094W 336 nt13.87□□□□□ -0.19
VPS13Q07878 YJR120WYJR120W 351 nt13.86□□□□□ -0.19
VPS13Q07878 YCH1YGR203W 447 nt13.85□□□□□ -0.19
VPS13Q07878 RTG1YOL067C 534 nt13.84□□□□□ -0.19
VPS13Q07878 SAH1YER043C 1350 nt13.84□□□□□ -0.19
VPS13Q07878 LPX1YOR084W 1164 nt13.83□□□□□ -0.2
VPS13Q07878 RPP2BYDR382W 333 nt13.77□□□□□ -0.21
VPS13Q07878 BDH2YAL061W 1254 nt13.76□□□□□ -0.21
VPS13Q07878 ERV46YAL042W 1248 nt13.62□□□□□ -0.23
VPS13Q07878 PUT4YOR348C 1884 nt13.6□□□□□ -0.23
VPS13Q07878 YLR154C-GYLR154C-G 150 nt13.53□□□□□ -0.24
VPS13Q07878 HUA1YGR268C 597 nt13.53□□□□□ -0.24
VPS13Q07878 IMP2'YIL154C 1041 nt13.53□□□□□ -0.24
VPS13Q07878 SIS1YNL007C 1059 nt13.5□□□□□ -0.25
VPS13Q07878 LSM3YLR438C-A 270 nt13.47□□□□□ -0.25
Retrieved 100 of 7,029 protein–RNA pairs in 8.5 ms