RNA–Protein interactions for RNA: ENSMUST00000108531.7

Nup88-203, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,453 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-203ENSMUST00000108531 Cdc42se2Q8BGH7 84 aa9.21□□□□□ -0.94
Nup88-203ENSMUST00000108531 Lypd5Q9D7Z7 256 aa9.21□□□□□ -0.94
Nup88-203ENSMUST00000108531 Usp9xP70398 2559 aaKnown RBP9.21□□□□□ -0.94
Nup88-203ENSMUST00000108531 Arid1bE9Q4N7 2244 aa9.2□□□□□ -0.94
Nup88-203ENSMUST00000108531 Gm10251J3QPM5 127 aa9.2□□□□□ -0.94
Nup88-203ENSMUST00000108531 Gm9922Q8C3P1 144 aa9.19□□□□□ -0.94
Nup88-203ENSMUST00000108531 Gm10577Q3UDV9 132 aa9.19□□□□□ -0.94
Nup88-203ENSMUST00000108531 9430069I07RikQ9CX21 111 aa9.19□□□□□ -0.94
Nup88-203ENSMUST00000108531 4930546C10RikE9Q4Y3 121 aa9.18□□□□□ -0.94
Nup88-203ENSMUST00000108531 P01745 121 aa9.18□□□□□ -0.94
Nup88-203ENSMUST00000108531 Lst1O08843 95 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 SvipQ3UZP4 77 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 RetnQ99P87 114 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 Nop10Q9CQS2 64 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 Cd164l2Q9D6W7 172 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 Notch3Q61982 2318 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 1700011M02RikB1AX35 88 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 CrygaP04345 174 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 Chchd7Q8K2Q5 85 aa9.17□□□□□ -0.94
Nup88-203ENSMUST00000108531 Gm26661M0QWV4 156 aa9.16□□□□□ -0.94
Nup88-203ENSMUST00000108531 BC067074F6RXI4 2391 aa9.16□□□□□ -0.94
Nup88-203ENSMUST00000108531 Znf740Q6NZQ6 180 aa9.16□□□□□ -0.94
Nup88-203ENSMUST00000108531 MalO09198 153 aa9.15□□□□□ -0.94
Nup88-203ENSMUST00000108531 Mapk1ip1lQ8BH93 242 aa9.15□□□□□ -0.94
Nup88-203ENSMUST00000108531 Atp5g1Q9CR84 136 aa9.15□□□□□ -0.94
Nup88-203ENSMUST00000108531 Crlf1Q9JM58 425 aa9.15□□□□□ -0.94
Nup88-203ENSMUST00000108531 Foxc1Q61572 553 aa9.15□□□□□ -0.94
Nup88-203ENSMUST00000108531 PemtQ61907 199 aa9.15□□□□□ -0.94
Nup88-203ENSMUST00000108531 TeppQ6IMH0 216 aa9.15□□□□□ -0.94
Nup88-203ENSMUST00000108531 Trav9d-3A0A075B695 113 aa9.14□□□□□ -0.95
Nup88-203ENSMUST00000108531 SelenowP63300 88 aa9.14□□□□□ -0.95
Nup88-203ENSMUST00000108531 Lage3Q9CR70 148 aa9.14□□□□□ -0.95
Nup88-203ENSMUST00000108531 Trav9d-4A0A0G2JG37 103 aa9.14□□□□□ -0.95
Nup88-203ENSMUST00000108531 Gm10300Q8C8P7 189 aa9.14□□□□□ -0.95
Nup88-203ENSMUST00000108531 Nhlrc1Q8BR37 401 aa9.13□□□□□ -0.95
Nup88-203ENSMUST00000108531 Ppp1r32Q148A4 427 aa9.13□□□□□ -0.95
Nup88-203ENSMUST00000108531 Gm10549Q3URY4 149 aa9.13□□□□□ -0.95
Nup88-203ENSMUST00000108531 Spata25Q9DA57 226 aa9.13□□□□□ -0.95
Nup88-203ENSMUST00000108531 Chd9Q8BYH8 2885 aa9.13□□□□□ -0.95
Nup88-203ENSMUST00000108531 Gm10772F7AIG4 85 aa9.12□□□□□ -0.95
Nup88-203ENSMUST00000108531 Prp2P05143 317 aa9.12□□□□□ -0.95
Nup88-203ENSMUST00000108531 Spry2Q9QXV8 315 aa9.12□□□□□ -0.95
Nup88-203ENSMUST00000108531 Chd6A3KFM7 2711 aa9.12□□□□□ -0.95
Nup88-203ENSMUST00000108531 Trav13-4-dv7A0A075B6C2 110 aa9.12□□□□□ -0.95
Nup88-203ENSMUST00000108531 Ighv1-49A0A0A6YWX2 117 aa9.12□□□□□ -0.95
Nup88-203ENSMUST00000108531 4930544G11RikQ9CR99 193 aa9.12□□□□□ -0.95
Nup88-203ENSMUST00000108531 Trav11A0A0B4J1J9 114 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 GfyJ3KML8 504 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Lyrm9Q3UN90 78 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Ankrd17Q99NH0 2603 aaKnown RBP9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Bahcc1Q3UHR0 2643 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Pglyrp4Q0VB07 374 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Gm904Q3V2L5 102 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Gpha2Q925Q5 128 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Znf414Q9DCK4 299 aa9.11□□□□□ -0.95
Nup88-203ENSMUST00000108531 Rpl35aO55142 110 aa9.1□□□□□ -0.95
Nup88-203ENSMUST00000108531 SbsponQ3UPR9 264 aa9.1□□□□□ -0.95
Nup88-203ENSMUST00000108531 Cox7a1P56392 80 aa9.1□□□□□ -0.95
Nup88-203ENSMUST00000108531 Rpl28P41105 137 aaKnown RBP9.09□□□□□ -0.95
Nup88-203ENSMUST00000108531 Ndufa3Q9CQ91 84 aa9.09□□□□□ -0.95
Nup88-203ENSMUST00000108531 Zfand2aQ9JII7 171 aa9.09□□□□□ -0.95
Nup88-203ENSMUST00000108531 Vmo1Q5SXG7 201 aa9.09□□□□□ -0.95
Nup88-203ENSMUST00000108531 Defb50Q6TU36 73 aa9.09□□□□□ -0.95
Nup88-203ENSMUST00000108531 MobpQ9D2P8 170 aa9.09□□□□□ -0.95
Nup88-203ENSMUST00000108531 Igkv4-72A0A0B4J1I4 117 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 Gm10647E9Q8X0 124 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 Il19Q8CJ70 176 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 Trav14d-3-dv8A0A075B619 120 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 Gm28539A0A087WSL9 92 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 Defb26Q30KN7 186 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 CdsnQ7TPC1 561 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 5730596B20RikQ8BQ08 205 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 Tm2d2Q8R0I4 213 aa9.08□□□□□ -0.96
Nup88-203ENSMUST00000108531 Gm10735Q3US96 136 aa9.07□□□□□ -0.96
Nup88-203ENSMUST00000108531 Tep1P97499 2629 aa9.07□□□□□ -0.96
Nup88-203ENSMUST00000108531 Sh2d1aO88890 126 aa9.07□□□□□ -0.96
Nup88-203ENSMUST00000108531 Ndufa12Q7TMF3 145 aaKnown RBP9.07□□□□□ -0.96
Nup88-203ENSMUST00000108531 Ss18l2Q9D174 77 aa9.07□□□□□ -0.96
Nup88-203ENSMUST00000108531 Ighv2-9-1A0A075B697 116 aa9.06□□□□□ -0.96
Nup88-203ENSMUST00000108531 Pfn2Q9JJV2 140 aa9.06□□□□□ -0.96
Nup88-203ENSMUST00000108531 Zfyve26Q5DU37 2529 aa9.06□□□□□ -0.96
Nup88-203ENSMUST00000108531 4930524J08RikQ9CUJ5 163 aa9.06□□□□□ -0.96
Nup88-203ENSMUST00000108531 Usp24B1AY13 2617 aaKnown RBP9.06□□□□□ -0.96
Nup88-203ENSMUST00000108531 Igkv1-117A0A140T8M0 119 aa9.05□□□□□ -0.96
Nup88-203ENSMUST00000108531 P01755 137 aa9.05□□□□□ -0.96
Nup88-203ENSMUST00000108531 Cox6b1P56391 86 aaKnown RBP9.05□□□□□ -0.96
Nup88-203ENSMUST00000108531 Acyp1P56376 99 aa9.05□□□□□ -0.96
Nup88-203ENSMUST00000108531 Trav13d-4A0A0G2JFX3 110 aa9.04□□□□□ -0.96
Nup88-203ENSMUST00000108531 Gm43218A0A0G2JGT0 114 aa9.04□□□□□ -0.96
Nup88-203ENSMUST00000108531 Xcl1P47993 114 aa9.04□□□□□ -0.96
Nup88-203ENSMUST00000108531 Esm1Q9QYY7 184 aa9.04□□□□□ -0.96
Nup88-203ENSMUST00000108531 Gm7257D3YX25 99 aa9.04□□□□□ -0.96
Nup88-203ENSMUST00000108531 Cd99Q8VCN6 175 aa9.04□□□□□ -0.96
Nup88-203ENSMUST00000108531 Cep192E9Q4Y4 2514 aaKnown RBP9.03□□□□□ -0.96
Nup88-203ENSMUST00000108531 Muc2Q80Z19 2680 aa9.03□□□□□ -0.96
Nup88-203ENSMUST00000108531 Gm16381A0A1Y7VKT9 73 aa9.03□□□□□ -0.96
Nup88-203ENSMUST00000108531 Nf1Q04690 2841 aa9.03□□□□□ -0.96
Nup88-203ENSMUST00000108531 Rif1Q6PR54 2419 aaKnown RBP9.03□□□□□ -0.96
Nup88-203ENSMUST00000108531 Gm867A0A1W2P7T4 151 aa9.03□□□□□ -0.96
Nup88-203ENSMUST00000108531 Krtap16-1A2A5X5 502 aa9.03□□□□□ -0.96
Retrieved 100 of 22,080 RNA–protein pairs in 13.2 ms