Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Gm25239-201ENSMUST00000174915 86 ntBASIC34.2■■■■□ 3.07
Chd6A3KFM7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Chd6A3KFM7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Chd6A3KFM7 Gm24109-201ENSMUST00000175489 103 ntBASIC30.36■■■□□ 2.45
Chd6A3KFM7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Chd6A3KFM7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
Chd6A3KFM7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Chd6A3KFM7 Gm15042-201ENSMUST00000120212 883 ntBASIC28.7■■■□□ 2.18
Chd6A3KFM7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.45■■■□□ 2.15
Chd6A3KFM7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Chd6A3KFM7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Chd6A3KFM7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Chd6A3KFM7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.2■■■□□ 2.1
Chd6A3KFM7 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC28.19■■■□□ 2.1
Chd6A3KFM7 Gm23366-201ENSMUST00000175022 89 ntBASIC28.15■■■□□ 2.1
Chd6A3KFM7 Gm15045-201ENSMUST00000117359 883 ntBASIC28.04■■■□□ 2.08
Chd6A3KFM7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC27.57■■■□□ 2
Chd6A3KFM7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Chd6A3KFM7 Gm25238-201ENSMUST00000174914 89 ntBASIC27.41■■□□□ 1.98
Chd6A3KFM7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Chd6A3KFM7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Chd6A3KFM7 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC26.96■■□□□ 1.91
Chd6A3KFM7 Gm25262-201ENSMUST00000174934 133 ntBASIC26.79■■□□□ 1.88
Chd6A3KFM7 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Chd6A3KFM7 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.87
Chd6A3KFM7 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
Chd6A3KFM7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Chd6A3KFM7 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
Chd6A3KFM7 Gm26115-201ENSMUST00000175605 87 ntBASIC26.38■■□□□ 1.81
Chd6A3KFM7 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC26.37■■□□□ 1.81
Chd6A3KFM7 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC26.3■■□□□ 1.8
Chd6A3KFM7 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC26.29■■□□□ 1.8
Chd6A3KFM7 Gm8109-201ENSMUST00000194076 746 ntBASIC26.13■■□□□ 1.77
Chd6A3KFM7 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Chd6A3KFM7 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.04■■□□□ 1.76
Chd6A3KFM7 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Chd6A3KFM7 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Chd6A3KFM7 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC25.75■■□□□ 1.71
Chd6A3KFM7 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.67■■□□□ 1.7
Chd6A3KFM7 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.58■■□□□ 1.69
Chd6A3KFM7 Rab21-202ENSMUST00000218831 843 ntBASIC25.33■■□□□ 1.65
Chd6A3KFM7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Chd6A3KFM7 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Chd6A3KFM7 Gm24804-201ENSMUST00000174982 85 ntBASIC25.29■■□□□ 1.64
Chd6A3KFM7 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC25.29■■□□□ 1.64
Chd6A3KFM7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Chd6A3KFM7 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC25.22■■□□□ 1.63
Chd6A3KFM7 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Chd6A3KFM7 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Chd6A3KFM7 Gm27325-201ENSMUST00000175467 74 ntBASIC25.17■■□□□ 1.62
Chd6A3KFM7 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Chd6A3KFM7 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Chd6A3KFM7 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Chd6A3KFM7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Chd6A3KFM7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Chd6A3KFM7 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC25.04■■□□□ 1.6
Chd6A3KFM7 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25.01■■□□□ 1.59
Chd6A3KFM7 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Chd6A3KFM7 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Chd6A3KFM7 Zfp131-205ENSMUST00000223812 663 ntBASIC24.97■■□□□ 1.59
Chd6A3KFM7 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Chd6A3KFM7 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
Chd6A3KFM7 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Chd6A3KFM7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
Chd6A3KFM7 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Chd6A3KFM7 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC24.74■■□□□ 1.55
Chd6A3KFM7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
Chd6A3KFM7 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC24.72■■□□□ 1.55
Chd6A3KFM7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Chd6A3KFM7 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC24.7■■□□□ 1.55
Chd6A3KFM7 Gm17082-201ENSMUST00000166043 1091 ntBASIC24.68■■□□□ 1.54
Chd6A3KFM7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.62■■□□□ 1.53
Chd6A3KFM7 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chd6A3KFM7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Chd6A3KFM7 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.53■■□□□ 1.52
Chd6A3KFM7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chd6A3KFM7 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chd6A3KFM7 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Chd6A3KFM7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.42■■□□□ 1.5
Chd6A3KFM7 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chd6A3KFM7 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chd6A3KFM7 Gm5987-201ENSMUST00000196433 1151 ntBASIC24.37■■□□□ 1.49
Chd6A3KFM7 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC24.33■■□□□ 1.49
Chd6A3KFM7 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
Chd6A3KFM7 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Chd6A3KFM7 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Chd6A3KFM7 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC24.32■■□□□ 1.48
Chd6A3KFM7 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Chd6A3KFM7 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Chd6A3KFM7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Chd6A3KFM7 Gm27322-201ENSMUST00000184007 104 ntBASIC24.24■■□□□ 1.47
Chd6A3KFM7 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Chd6A3KFM7 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Chd6A3KFM7 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Chd6A3KFM7 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC24.17■■□□□ 1.46
Chd6A3KFM7 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Chd6A3KFM7 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Chd6A3KFM7 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC24.15■■□□□ 1.46
Chd6A3KFM7 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC24.14■■□□□ 1.46
Chd6A3KFM7 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms