RNA–Protein interactions for RNA: ENSMUST00000108531.7

Nup88-203, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,453 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-203ENSMUST00000108531 NischQ80TM9 1593 aa24.51■■□□□ 1.51
Nup88-203ENSMUST00000108531 Gm35339A0A140LHH9 1649 aa24.05■■□□□ 1.44
Nup88-203ENSMUST00000108531 Abcc9P70170 1546 aa23.87■■□□□ 1.41
Nup88-203ENSMUST00000108531 Abcc8B2RUS7 1588 aa23.22■■□□□ 1.31
Nup88-203ENSMUST00000108531 Rtl1Q7M732 1744 aa22.94■■□□□ 1.26
Nup88-203ENSMUST00000108531 Rhox8Q6VSS7 320 aa22.86■■□□□ 1.25
Nup88-203ENSMUST00000108531 Ccdc180J3QNE4 1664 aa22.53■■□□□ 1.2
Nup88-203ENSMUST00000108531 Zcchc6Q5BLK4 1491 aaKnown RBP22.01■■□□□ 1.11
Nup88-203ENSMUST00000108531 Dcaf1Q80TR8 1506 aa21.75■■□□□ 1.07
Nup88-203ENSMUST00000108531 Rpgrip1Q9EPQ2 1331 aa21.7■■□□□ 1.06
Nup88-203ENSMUST00000108531 ScribQ80U72 1612 aa21.53■■□□□ 1.04
Nup88-203ENSMUST00000108531 Rb1cc1Q9ESK9 1588 aa21.52■■□□□ 1.04
Nup88-203ENSMUST00000108531 HrcG5E8J6 738 aa21.35■■□□□ 1.01
Nup88-203ENSMUST00000108531 Baz1aO88379 1555 aa21.29■■□□□ 1
Nup88-203ENSMUST00000108531 Acin1Q9JIX8 1338 aaKnown RBP21.25■□□□□ 0.99
Nup88-203ENSMUST00000108531 Kdm5dQ62240 1548 aa21.19■□□□□ 0.98
Nup88-203ENSMUST00000108531 Ccdc136Q3TVA9 1136 aa21.14■□□□□ 0.97
Nup88-203ENSMUST00000108531 NacadQ5SWP3 1504 aa20.98■□□□□ 0.95
Nup88-203ENSMUST00000108531 Ehmt2Q9Z148 1263 aaKnown RBP20.93■□□□□ 0.94
Nup88-203ENSMUST00000108531 Smarca2Q6DIC0 1577 aa20.83■□□□□ 0.93
Nup88-203ENSMUST00000108531 Crybg2B7ZCC2 1516 aa20.83■□□□□ 0.92
Nup88-203ENSMUST00000108531 Trim41Q5NCC3 630 aa20.83■□□□□ 0.92
Nup88-203ENSMUST00000108531 Cep164Q5DU05 1446 aa20.71■□□□□ 0.91
Nup88-203ENSMUST00000108531 Sycp2Q9CUU3 1500 aa20.51■□□□□ 0.87
Nup88-203ENSMUST00000108531 Pcgf6Q99NA9 353 aa20.43■□□□□ 0.86
Nup88-203ENSMUST00000108531 Brd4Q9ESU6 1400 aaKnown RBP20.32■□□□□ 0.84
Nup88-203ENSMUST00000108531 Rsf1E9PWW9 1441 aaKnown RBP20.32■□□□□ 0.84
Nup88-203ENSMUST00000108531 Cngb1E1AZ71 1325 aa20.24■□□□□ 0.83
Nup88-203ENSMUST00000108531 Chic1Q8CBW7 227 aa20.21■□□□□ 0.83
Nup88-203ENSMUST00000108531 Golga3P55937 1487 aa20.2■□□□□ 0.82
Nup88-203ENSMUST00000108531 Cecr2E9Q2Z1 1453 aa20.19■□□□□ 0.82
Nup88-203ENSMUST00000108531 Ccdc88bQ4QRL3 1481 aa20.14■□□□□ 0.81
Nup88-203ENSMUST00000108531 Synj1Q8CHC4 1574 aa20.13■□□□□ 0.81
Nup88-203ENSMUST00000108531 Gab3Q8BSM5 595 aa20.09■□□□□ 0.81
Nup88-203ENSMUST00000108531 Supt5hO55201 1082 aaKnown RBP20.05■□□□□ 0.8
Nup88-203ENSMUST00000108531 BicraF8VPZ9 1578 aa20.01■□□□□ 0.79
Nup88-203ENSMUST00000108531 CftrP26361 1476 aa19.97■□□□□ 0.79
Nup88-203ENSMUST00000108531 Top2bQ64511 1612 aa19.96■□□□□ 0.79
Nup88-203ENSMUST00000108531 NefmP08553 848 aa19.9■□□□□ 0.78
Nup88-203ENSMUST00000108531 Cttnbp2B9EJA2 1648 aa19.88■□□□□ 0.77
Nup88-203ENSMUST00000108531 Mier1Q5UAK0 511 aa19.82■□□□□ 0.76
Nup88-203ENSMUST00000108531 Esf1Q3V1V3 845 aaKnown RBP19.81■□□□□ 0.76
Nup88-203ENSMUST00000108531 Cc2d2aQ8CFW7 1633 aa19.74■□□□□ 0.75
Nup88-203ENSMUST00000108531 Zeb1Q64318 1117 aa19.74■□□□□ 0.75
Nup88-203ENSMUST00000108531 Smarca4Q3TKT4 1613 aaKnown RBP19.7■□□□□ 0.74
Nup88-203ENSMUST00000108531 Rapgef2Q8CHG7 1496 aa19.67■□□□□ 0.74
Nup88-203ENSMUST00000108531 Fmn1Q05860 1466 aa19.63■□□□□ 0.73
Nup88-203ENSMUST00000108531 Top2aQ01320 1528 aaKnown RBP19.6■□□□□ 0.73
Nup88-203ENSMUST00000108531 Neurod1Q60867 357 aa19.59■□□□□ 0.73
Nup88-203ENSMUST00000108531 Sall2Q9QX96 1004 aa19.52■□□□□ 0.72
Nup88-203ENSMUST00000108531 Cep162Q6ZQ06 1403 aa19.48■□□□□ 0.71
Nup88-203ENSMUST00000108531 UbtfP25976 765 aaKnown RBP19.45■□□□□ 0.7
Nup88-203ENSMUST00000108531 Iqgap2Q3UQ44 1575 aa19.4■□□□□ 0.7
Nup88-203ENSMUST00000108531 Las1lA2BE28 776 aaKnown RBP19.34■□□□□ 0.69
Nup88-203ENSMUST00000108531 Eif4g1Q6NZJ6 1600 aaKnown RBP19.34■□□□□ 0.69
Nup88-203ENSMUST00000108531 Myt1lP97500 1187 aa19.3■□□□□ 0.68
Nup88-203ENSMUST00000108531 TnnQ80Z71 1560 aa19.25■□□□□ 0.67
Nup88-203ENSMUST00000108531 Wdr66E9Q743 1299 aa19.24■□□□□ 0.67
Nup88-203ENSMUST00000108531 Npm2Q80W85 207 aa19.24■□□□□ 0.67
Nup88-203ENSMUST00000108531 Aebp2Q9Z248 504 aaKnown RBP19.22■□□□□ 0.67
Nup88-203ENSMUST00000108531 Atad2bE9Q166 1460 aaKnown RBP19.22■□□□□ 0.67
Nup88-203ENSMUST00000108531 Clip1Q922J3 1391 aa19.21■□□□□ 0.67
Nup88-203ENSMUST00000108531 Anks4bQ8K3X6 423 aa19.19■□□□□ 0.66
Nup88-203ENSMUST00000108531 ClspnQ80YR7 1315 aa19.19■□□□□ 0.66
Nup88-203ENSMUST00000108531 Ncapd3Q6ZQK0 1506 aa19.14■□□□□ 0.65
Nup88-203ENSMUST00000108531 TonslQ6NZL6 1363 aa19.12■□□□□ 0.65
Nup88-203ENSMUST00000108531 Arhgap35Q91YM2 1499 aa19.09■□□□□ 0.65
Nup88-203ENSMUST00000108531 Plekhg3Q4VAC9 1341 aa19.09■□□□□ 0.65
Nup88-203ENSMUST00000108531 Pds5bQ4VA53 1446 aaKnown RBP19.06■□□□□ 0.64
Nup88-203ENSMUST00000108531 NrkQ9R0G8 1455 aa19.05■□□□□ 0.64
Nup88-203ENSMUST00000108531 Cdk11bP24788 784 aaKnown RBP19.02■□□□□ 0.64
Nup88-203ENSMUST00000108531 Nop58Q6DFW4 536 aaKnown RBP19.01■□□□□ 0.63
Nup88-203ENSMUST00000108531 PtprkP35822 1457 aa18.99■□□□□ 0.63
Nup88-203ENSMUST00000108531 Arap1Q4LDD4 1452 aa18.99■□□□□ 0.63
Nup88-203ENSMUST00000108531 Lamc3Q9R0B6 1581 aa18.99■□□□□ 0.63
Nup88-203ENSMUST00000108531 Eea1Q8BL66 1411 aa18.99■□□□□ 0.63
Nup88-203ENSMUST00000108531 Wdr62Q3U3T8 1523 aa18.97■□□□□ 0.63
Nup88-203ENSMUST00000108531 Frmpd1A2AKB4 1549 aa18.96■□□□□ 0.63
Nup88-203ENSMUST00000108531 Arhgef5E9Q7D5 1581 aa18.94■□□□□ 0.62
Nup88-203ENSMUST00000108531 Map3k1P53349 1493 aa18.93■□□□□ 0.62
Nup88-203ENSMUST00000108531 Ccdc18Q640L5 1455 aa18.93■□□□□ 0.62
Nup88-203ENSMUST00000108531 Shroom4Q1W617 1475 aa18.93■□□□□ 0.62
Nup88-203ENSMUST00000108531 Csrnp3P59055 597 aa18.92■□□□□ 0.62
Nup88-203ENSMUST00000108531 Kdm5bQ80Y84 1544 aa18.89■□□□□ 0.62
Nup88-203ENSMUST00000108531 1700123L14RikQ3V2K7 440 aa18.89■□□□□ 0.61
Nup88-203ENSMUST00000108531 Ppargc1bQ8VHJ7 1014 aa18.89■□□□□ 0.61
Nup88-203ENSMUST00000108531 Camsap1A2AHC3 1581 aa18.88■□□□□ 0.61
Nup88-203ENSMUST00000108531 Setd5Q5XJV7 1441 aa18.86■□□□□ 0.61
Nup88-203ENSMUST00000108531 Kif15Q6P9L6 1387 aa18.84■□□□□ 0.61
Nup88-203ENSMUST00000108531 Tiam1Q60610 1591 aa18.83■□□□□ 0.6
Nup88-203ENSMUST00000108531 TchhA0A0B4J1F9 1599 aa18.81■□□□□ 0.6
Nup88-203ENSMUST00000108531 Erich3F6QRE9 1637 aa18.79■□□□□ 0.6
Nup88-203ENSMUST00000108531 Unc13aQ4KUS2 1712 aa18.78■□□□□ 0.6
Nup88-203ENSMUST00000108531 Il27Q8K3I6 234 aa18.77■□□□□ 0.6
Nup88-203ENSMUST00000108531 Ap3b1Q9Z1T1 1105 aa18.77■□□□□ 0.6
Nup88-203ENSMUST00000108531 Ercc6F8VPZ5 1481 aa18.77■□□□□ 0.59
Nup88-203ENSMUST00000108531 Grin2bQ01097 1482 aa18.76■□□□□ 0.59
Nup88-203ENSMUST00000108531 Aplp2Q06335 707 aa18.75■□□□□ 0.59
Nup88-203ENSMUST00000108531 Mroh2bQ7M6Y6 1581 aa18.74■□□□□ 0.59
Nup88-203ENSMUST00000108531 Ankrd26Q811D2 1581 aa18.73■□□□□ 0.59
Retrieved 100 of 22,080 RNA–protein pairs in 17.3 ms