Protein–RNA interactions for Protein: O88890

Sh2d1a, SH2 domain-containing protein 1A, mousemouse

Predictions only

Length 126 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh2d1aO88890 Gm25239-201ENSMUST00000174915 86 ntBASIC25,21■■□□□ 1,63
Sh2d1aO88890 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23,85■■□□□ 1,41
Sh2d1aO88890 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23,14■■□□□ 1,29
Sh2d1aO88890 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23,13■■□□□ 1,29
Sh2d1aO88890 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22,98■■□□□ 1,27
Sh2d1aO88890 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC22,85■■□□□ 1,25
Sh2d1aO88890 Gm15042-201ENSMUST00000120212 883 ntBASIC22,4■■□□□ 1,18
Sh2d1aO88890 Psd-208ENSMUST00000224556 2034 ntBASIC22,16■■□□□ 1,14
Sh2d1aO88890 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22,14■■□□□ 1,13
Sh2d1aO88890 Gm15045-201ENSMUST00000117359 883 ntBASIC21,95■■□□□ 1,1
Sh2d1aO88890 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21,75■■□□□ 1,07
Sh2d1aO88890 Gm24109-201ENSMUST00000175489 103 ntBASIC21,65■■□□□ 1,06
Sh2d1aO88890 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21,64■■□□□ 1,06
Sh2d1aO88890 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21,6■■□□□ 1,05
Sh2d1aO88890 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21,56■■□□□ 1,04
Sh2d1aO88890 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21,48■■□□□ 1,03
Sh2d1aO88890 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21,31■■□□□ 1
Sh2d1aO88890 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21,31■■□□□ 1
Sh2d1aO88890 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21,26■□□□□ 0,99
Sh2d1aO88890 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21,23■□□□□ 0,99
Sh2d1aO88890 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21,22■□□□□ 0,99
Sh2d1aO88890 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21,2■□□□□ 0,98
Sh2d1aO88890 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21,2■□□□□ 0,98
Sh2d1aO88890 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21,19■□□□□ 0,98
Sh2d1aO88890 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21,18■□□□□ 0,98
Sh2d1aO88890 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21,15■□□□□ 0,98
Sh2d1aO88890 Gm23366-201ENSMUST00000175022 89 ntBASIC21,09■□□□□ 0,97
Sh2d1aO88890 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21,03■□□□□ 0,96
Sh2d1aO88890 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20,99■□□□□ 0,95
Sh2d1aO88890 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC20,96■□□□□ 0,95
Sh2d1aO88890 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20,9■□□□□ 0,94
Sh2d1aO88890 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20,86■□□□□ 0,93
Sh2d1aO88890 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20,85■□□□□ 0,93
Sh2d1aO88890 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20,83■□□□□ 0,93
Sh2d1aO88890 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20,81■□□□□ 0,92
Sh2d1aO88890 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20,72■□□□□ 0,91
Sh2d1aO88890 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20,66■□□□□ 0,9
Sh2d1aO88890 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20,62■□□□□ 0,89
Sh2d1aO88890 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20,62■□□□□ 0,89
Sh2d1aO88890 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20,61■□□□□ 0,89
Sh2d1aO88890 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC20,58■□□□□ 0,88
Sh2d1aO88890 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20,49■□□□□ 0,87
Sh2d1aO88890 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20,41■□□□□ 0,86
Sh2d1aO88890 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20,35■□□□□ 0,85
Sh2d1aO88890 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20,32■□□□□ 0,84
Sh2d1aO88890 Gm10524-201ENSMUST00000181931 1893 ntBASIC20,29■□□□□ 0,84
Sh2d1aO88890 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20,27■□□□□ 0,84
Sh2d1aO88890 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20,26■□□□□ 0,83
Sh2d1aO88890 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20,24■□□□□ 0,83
Sh2d1aO88890 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20,17■□□□□ 0,82
Sh2d1aO88890 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20,09■□□□□ 0,81
Sh2d1aO88890 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20,05■□□□□ 0,8
Sh2d1aO88890 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20,04■□□□□ 0,8
Sh2d1aO88890 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19,98■□□□□ 0,79
Sh2d1aO88890 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19,94■□□□□ 0,78
Sh2d1aO88890 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19,93■□□□□ 0,78
Sh2d1aO88890 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19,9■□□□□ 0,78
Sh2d1aO88890 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19,9■□□□□ 0,78
Sh2d1aO88890 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC19,88■□□□□ 0,77
Sh2d1aO88890 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC19,86■□□□□ 0,77
Sh2d1aO88890 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC19,83■□□□□ 0,77
Sh2d1aO88890 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19,83■□□□□ 0,76
Sh2d1aO88890 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19,81■□□□□ 0,76
Sh2d1aO88890 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC19,8■□□□□ 0,76
Sh2d1aO88890 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19,79■□□□□ 0,76
Sh2d1aO88890 Gm42596-201ENSMUST00000196305 1958 ntBASIC19,79■□□□□ 0,76
Sh2d1aO88890 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC19,78■□□□□ 0,76
Sh2d1aO88890 Gm25238-201ENSMUST00000174914 89 ntBASIC19,77■□□□□ 0,76
Sh2d1aO88890 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC19,76■□□□□ 0,75
Sh2d1aO88890 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19,75■□□□□ 0,75
Sh2d1aO88890 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19,75■□□□□ 0,75
Sh2d1aO88890 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC19,72■□□□□ 0,75
Sh2d1aO88890 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC19,7■□□□□ 0,74
Sh2d1aO88890 Gm27325-201ENSMUST00000175467 74 ntBASIC19,68■□□□□ 0,74
Sh2d1aO88890 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC19,61■□□□□ 0,73
Sh2d1aO88890 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19,6■□□□□ 0,73
Sh2d1aO88890 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC19,54■□□□□ 0,72
Sh2d1aO88890 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19,53■□□□□ 0,72
Sh2d1aO88890 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19,52■□□□□ 0,71
Sh2d1aO88890 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19,51■□□□□ 0,71
Sh2d1aO88890 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19,5■□□□□ 0,71
Sh2d1aO88890 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19,49■□□□□ 0,71
Sh2d1aO88890 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19,48■□□□□ 0,71
Sh2d1aO88890 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19,48■□□□□ 0,71
Sh2d1aO88890 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC19,44■□□□□ 0,7
Sh2d1aO88890 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19,43■□□□□ 0,7
Sh2d1aO88890 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19,43■□□□□ 0,7
Sh2d1aO88890 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19,4■□□□□ 0,7
Sh2d1aO88890 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC19,35■□□□□ 0,69
Sh2d1aO88890 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19,34■□□□□ 0,69
Sh2d1aO88890 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC19,33■□□□□ 0,68
Sh2d1aO88890 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19,32■□□□□ 0,68
Sh2d1aO88890 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19,31■□□□□ 0,68
Sh2d1aO88890 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19,3■□□□□ 0,68
Sh2d1aO88890 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC19,28■□□□□ 0,68
Sh2d1aO88890 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19,28■□□□□ 0,68
Sh2d1aO88890 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19,27■□□□□ 0,68
Sh2d1aO88890 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC19,27■□□□□ 0,68
Sh2d1aO88890 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19,27■□□□□ 0,68
Sh2d1aO88890 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19,26■□□□□ 0,67
Retrieved 100 of 76,532 protein–RNA pairs in 10,5 ms