Protein–RNA interactions for Protein: A0A0G2JG37

Trav9d-4, T cell receptor alpha variable 9D-4 (Fragment), mousemouse

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9d-4A0A0G2JG37 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23,26■■□□□ 1,31
Trav9d-4A0A0G2JG37 Gm25239-201ENSMUST00000174915 86 ntBASIC22,62■■□□□ 1,21
Trav9d-4A0A0G2JG37 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22,39■■□□□ 1,18
Trav9d-4A0A0G2JG37 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22,36■■□□□ 1,17
Trav9d-4A0A0G2JG37 Psd-208ENSMUST00000224556 2034 ntBASIC21,81■■□□□ 1,08
Trav9d-4A0A0G2JG37 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21,77■■□□□ 1,08
Trav9d-4A0A0G2JG37 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21,43■■□□□ 1,02
Trav9d-4A0A0G2JG37 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21,26■□□□□ 0,99
Trav9d-4A0A0G2JG37 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21,09■□□□□ 0,97
Trav9d-4A0A0G2JG37 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20,84■□□□□ 0,93
Trav9d-4A0A0G2JG37 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20,79■□□□□ 0,92
Trav9d-4A0A0G2JG37 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20,78■□□□□ 0,92
Trav9d-4A0A0G2JG37 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC20,75■□□□□ 0,91
Trav9d-4A0A0G2JG37 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20,69■□□□□ 0,9
Trav9d-4A0A0G2JG37 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20,55■□□□□ 0,88
Trav9d-4A0A0G2JG37 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20,55■□□□□ 0,88
Trav9d-4A0A0G2JG37 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20,47■□□□□ 0,87
Trav9d-4A0A0G2JG37 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20,47■□□□□ 0,87
Trav9d-4A0A0G2JG37 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20,47■□□□□ 0,87
Trav9d-4A0A0G2JG37 Gm15042-201ENSMUST00000120212 883 ntBASIC20,34■□□□□ 0,85
Trav9d-4A0A0G2JG37 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20,29■□□□□ 0,84
Trav9d-4A0A0G2JG37 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20,27■□□□□ 0,84
Trav9d-4A0A0G2JG37 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20,21■□□□□ 0,83
Trav9d-4A0A0G2JG37 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20,18■□□□□ 0,82
Trav9d-4A0A0G2JG37 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20,17■□□□□ 0,82
Trav9d-4A0A0G2JG37 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20,05■□□□□ 0,8
Trav9d-4A0A0G2JG37 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19,97■□□□□ 0,79
Trav9d-4A0A0G2JG37 Gm15045-201ENSMUST00000117359 883 ntBASIC19,97■□□□□ 0,79
Trav9d-4A0A0G2JG37 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19,97■□□□□ 0,79
Trav9d-4A0A0G2JG37 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19,92■□□□□ 0,78
Trav9d-4A0A0G2JG37 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19,86■□□□□ 0,77
Trav9d-4A0A0G2JG37 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19,85■□□□□ 0,77
Trav9d-4A0A0G2JG37 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19,85■□□□□ 0,77
Trav9d-4A0A0G2JG37 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC19,8■□□□□ 0,76
Trav9d-4A0A0G2JG37 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC19,75■□□□□ 0,75
Trav9d-4A0A0G2JG37 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC19,75■□□□□ 0,75
Trav9d-4A0A0G2JG37 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19,74■□□□□ 0,75
Trav9d-4A0A0G2JG37 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19,71■□□□□ 0,75
Trav9d-4A0A0G2JG37 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19,71■□□□□ 0,75
Trav9d-4A0A0G2JG37 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19,7■□□□□ 0,74
Trav9d-4A0A0G2JG37 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19,7■□□□□ 0,74
Trav9d-4A0A0G2JG37 Gm10524-201ENSMUST00000181931 1893 ntBASIC19,65■□□□□ 0,74
Trav9d-4A0A0G2JG37 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19,62■□□□□ 0,73
Trav9d-4A0A0G2JG37 Gm42596-201ENSMUST00000196305 1958 ntBASIC19,56■□□□□ 0,72
Trav9d-4A0A0G2JG37 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19,54■□□□□ 0,72
Trav9d-4A0A0G2JG37 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19,54■□□□□ 0,72
Trav9d-4A0A0G2JG37 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19,54■□□□□ 0,72
Trav9d-4A0A0G2JG37 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19,45■□□□□ 0,7
Trav9d-4A0A0G2JG37 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19,43■□□□□ 0,7
Trav9d-4A0A0G2JG37 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19,41■□□□□ 0,7
Trav9d-4A0A0G2JG37 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19,37■□□□□ 0,69
Trav9d-4A0A0G2JG37 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19,36■□□□□ 0,69
Trav9d-4A0A0G2JG37 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19,34■□□□□ 0,69
Trav9d-4A0A0G2JG37 Gm24109-201ENSMUST00000175489 103 ntBASIC19,34■□□□□ 0,69
Trav9d-4A0A0G2JG37 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19,32■□□□□ 0,68
Trav9d-4A0A0G2JG37 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19,31■□□□□ 0,68
Trav9d-4A0A0G2JG37 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19,3■□□□□ 0,68
Trav9d-4A0A0G2JG37 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19,25■□□□□ 0,67
Trav9d-4A0A0G2JG37 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19,24■□□□□ 0,67
Trav9d-4A0A0G2JG37 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19,23■□□□□ 0,67
Trav9d-4A0A0G2JG37 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19,12■□□□□ 0,65
Trav9d-4A0A0G2JG37 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19,1■□□□□ 0,65
Trav9d-4A0A0G2JG37 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19,09■□□□□ 0,65
Trav9d-4A0A0G2JG37 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19,08■□□□□ 0,65
Trav9d-4A0A0G2JG37 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19,07■□□□□ 0,64
Trav9d-4A0A0G2JG37 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19,05■□□□□ 0,64
Trav9d-4A0A0G2JG37 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19,03■□□□□ 0,64
Trav9d-4A0A0G2JG37 Gm23366-201ENSMUST00000175022 89 ntBASIC19,03■□□□□ 0,64
Trav9d-4A0A0G2JG37 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19,03■□□□□ 0,64
Trav9d-4A0A0G2JG37 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19,01■□□□□ 0,63
Trav9d-4A0A0G2JG37 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19,01■□□□□ 0,63
Trav9d-4A0A0G2JG37 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC19■□□□□ 0,63
Trav9d-4A0A0G2JG37 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0,63
Trav9d-4A0A0G2JG37 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18,92■□□□□ 0,62
Trav9d-4A0A0G2JG37 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18,87■□□□□ 0,61
Trav9d-4A0A0G2JG37 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC18,86■□□□□ 0,61
Trav9d-4A0A0G2JG37 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC18,86■□□□□ 0,61
Trav9d-4A0A0G2JG37 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18,85■□□□□ 0,61
Trav9d-4A0A0G2JG37 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18,84■□□□□ 0,61
Trav9d-4A0A0G2JG37 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18,8■□□□□ 0,6
Trav9d-4A0A0G2JG37 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18,79■□□□□ 0,6
Trav9d-4A0A0G2JG37 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC18,76■□□□□ 0,59
Trav9d-4A0A0G2JG37 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC18,75■□□□□ 0,59
Trav9d-4A0A0G2JG37 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC18,72■□□□□ 0,59
Trav9d-4A0A0G2JG37 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18,71■□□□□ 0,59
Trav9d-4A0A0G2JG37 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18,71■□□□□ 0,59
Trav9d-4A0A0G2JG37 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC18,71■□□□□ 0,59
Trav9d-4A0A0G2JG37 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18,69■□□□□ 0,58
Trav9d-4A0A0G2JG37 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC18,63■□□□□ 0,57
Trav9d-4A0A0G2JG37 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC18,62■□□□□ 0,57
Trav9d-4A0A0G2JG37 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18,62■□□□□ 0,57
Trav9d-4A0A0G2JG37 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC18,57■□□□□ 0,56
Trav9d-4A0A0G2JG37 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18,57■□□□□ 0,56
Trav9d-4A0A0G2JG37 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18,56■□□□□ 0,56
Trav9d-4A0A0G2JG37 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC18,56■□□□□ 0,56
Trav9d-4A0A0G2JG37 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC18,55■□□□□ 0,56
Trav9d-4A0A0G2JG37 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18,55■□□□□ 0,56
Trav9d-4A0A0G2JG37 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC18,49■□□□□ 0,55
Trav9d-4A0A0G2JG37 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18,49■□□□□ 0,55
Trav9d-4A0A0G2JG37 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC18,48■□□□□ 0,55
Retrieved 100 of 76,532 protein–RNA pairs in 11,7 ms