Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Gm25239-201ENSMUST00000174915 86 ntBASIC35.24■■■■□ 3.23
Rif1Q6PR54 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
Rif1Q6PR54 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Rif1Q6PR54 Gm24109-201ENSMUST00000175489 103 ntBASIC31.12■■■□□ 2.57
Rif1Q6PR54 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Rif1Q6PR54 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
Rif1Q6PR54 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
Rif1Q6PR54 Gm15042-201ENSMUST00000120212 883 ntBASIC29.53■■■□□ 2.32
Rif1Q6PR54 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Rif1Q6PR54 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Rif1Q6PR54 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.2■■■□□ 2.26
Rif1Q6PR54 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.12■■■□□ 2.25
Rif1Q6PR54 Gm23366-201ENSMUST00000175022 89 ntBASIC29.07■■■□□ 2.24
Rif1Q6PR54 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.98■■■□□ 2.23
Rif1Q6PR54 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Rif1Q6PR54 Gm15045-201ENSMUST00000117359 883 ntBASIC28.68■■■□□ 2.18
Rif1Q6PR54 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.31■■■□□ 2.12
Rif1Q6PR54 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Rif1Q6PR54 Gm25238-201ENSMUST00000174914 89 ntBASIC28.09■■■□□ 2.09
Rif1Q6PR54 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Rif1Q6PR54 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Rif1Q6PR54 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.71■■■□□ 2.03
Rif1Q6PR54 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.52■■■□□ 2
Rif1Q6PR54 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Rif1Q6PR54 Gm25262-201ENSMUST00000174934 133 ntBASIC27.46■■□□□ 1.99
Rif1Q6PR54 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC27.44■■□□□ 1.98
Rif1Q6PR54 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
Rif1Q6PR54 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
Rif1Q6PR54 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.2■■□□□ 1.95
Rif1Q6PR54 Gm26115-201ENSMUST00000175605 87 ntBASIC27.17■■□□□ 1.94
Rif1Q6PR54 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.17■■□□□ 1.94
Rif1Q6PR54 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Rif1Q6PR54 Gm8109-201ENSMUST00000194076 746 ntBASIC26.92■■□□□ 1.9
Rif1Q6PR54 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC26.9■■□□□ 1.9
Rif1Q6PR54 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Rif1Q6PR54 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Rif1Q6PR54 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.57■■□□□ 1.84
Rif1Q6PR54 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC26.47■■□□□ 1.83
Rif1Q6PR54 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.47■■□□□ 1.83
Rif1Q6PR54 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC26.41■■□□□ 1.82
Rif1Q6PR54 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Rif1Q6PR54 Rab21-202ENSMUST00000218831 843 ntBASIC26.09■■□□□ 1.77
Rif1Q6PR54 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Rif1Q6PR54 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Rif1Q6PR54 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Rif1Q6PR54 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC25.98■■□□□ 1.75
Rif1Q6PR54 Gm27325-201ENSMUST00000175467 74 ntBASIC25.95■■□□□ 1.74
Rif1Q6PR54 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC25.92■■□□□ 1.74
Rif1Q6PR54 Gm24804-201ENSMUST00000174982 85 ntBASIC25.9■■□□□ 1.74
Rif1Q6PR54 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Rif1Q6PR54 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Rif1Q6PR54 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Rif1Q6PR54 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Rif1Q6PR54 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Rif1Q6PR54 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Rif1Q6PR54 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Rif1Q6PR54 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Rif1Q6PR54 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Rif1Q6PR54 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC25.69■■□□□ 1.7
Rif1Q6PR54 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25.66■■□□□ 1.7
Rif1Q6PR54 Zfp131-205ENSMUST00000223812 663 ntBASIC25.66■■□□□ 1.7
Rif1Q6PR54 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Rif1Q6PR54 Gm17082-201ENSMUST00000166043 1091 ntBASIC25.44■■□□□ 1.66
Rif1Q6PR54 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Rif1Q6PR54 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC25.41■■□□□ 1.66
Rif1Q6PR54 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Rif1Q6PR54 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Rif1Q6PR54 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC25.37■■□□□ 1.65
Rif1Q6PR54 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
Rif1Q6PR54 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC25.3■■□□□ 1.64
Rif1Q6PR54 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
Rif1Q6PR54 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.27■■□□□ 1.64
Rif1Q6PR54 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Rif1Q6PR54 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Rif1Q6PR54 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Rif1Q6PR54 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
Rif1Q6PR54 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC25.15■■□□□ 1.62
Rif1Q6PR54 Gm5987-201ENSMUST00000196433 1151 ntBASIC25.14■■□□□ 1.61
Rif1Q6PR54 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.12■■□□□ 1.61
Rif1Q6PR54 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Rif1Q6PR54 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Rif1Q6PR54 Gm27322-201ENSMUST00000184007 104 ntBASIC25.08■■□□□ 1.61
Rif1Q6PR54 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Rif1Q6PR54 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Rif1Q6PR54 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.05■■□□□ 1.6
Rif1Q6PR54 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rif1Q6PR54 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rif1Q6PR54 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rif1Q6PR54 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rif1Q6PR54 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rif1Q6PR54 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Rif1Q6PR54 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Rif1Q6PR54 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Rif1Q6PR54 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC24.9■■□□□ 1.58
Rif1Q6PR54 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Rif1Q6PR54 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC24.88■■□□□ 1.57
Rif1Q6PR54 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC24.86■■□□□ 1.57
Rif1Q6PR54 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Rif1Q6PR54 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
Rif1Q6PR54 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC24.77■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms