Protein–RNA interactions for Protein: A0A075B695

Trav9d-3, T cell receptor alpha variable 9D-3 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9d-3A0A075B695 Gm25239-201ENSMUST00000174915 86 ntBASIC25.54■■□□□ 1.68
Trav9d-3A0A075B695 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trav9d-3A0A075B695 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Trav9d-3A0A075B695 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trav9d-3A0A075B695 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Trav9d-3A0A075B695 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trav9d-3A0A075B695 Gm15042-201ENSMUST00000120212 883 ntBASIC22.73■■□□□ 1.23
Trav9d-3A0A075B695 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav9d-3A0A075B695 Psd-208ENSMUST00000224556 2034 ntBASIC22.39■■□□□ 1.17
Trav9d-3A0A075B695 Gm15045-201ENSMUST00000117359 883 ntBASIC22.25■■□□□ 1.15
Trav9d-3A0A075B695 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav9d-3A0A075B695 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav9d-3A0A075B695 Gm24109-201ENSMUST00000175489 103 ntBASIC21.92■■□□□ 1.1
Trav9d-3A0A075B695 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.92■■□□□ 1.1
Trav9d-3A0A075B695 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav9d-3A0A075B695 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trav9d-3A0A075B695 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trav9d-3A0A075B695 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav9d-3A0A075B695 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav9d-3A0A075B695 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav9d-3A0A075B695 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav9d-3A0A075B695 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav9d-3A0A075B695 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav9d-3A0A075B695 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav9d-3A0A075B695 Gm23366-201ENSMUST00000175022 89 ntBASIC21.41■■□□□ 1.02
Trav9d-3A0A075B695 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav9d-3A0A075B695 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav9d-3A0A075B695 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trav9d-3A0A075B695 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.28■■□□□ 1
Trav9d-3A0A075B695 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav9d-3A0A075B695 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav9d-3A0A075B695 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav9d-3A0A075B695 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav9d-3A0A075B695 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.1■□□□□ 0.97
Trav9d-3A0A075B695 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav9d-3A0A075B695 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav9d-3A0A075B695 AC153911.1-202ENSMUST00000218534 1034 ntBASIC20.88■□□□□ 0.93
Trav9d-3A0A075B695 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Trav9d-3A0A075B695 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav9d-3A0A075B695 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav9d-3A0A075B695 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav9d-3A0A075B695 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.72■□□□□ 0.91
Trav9d-3A0A075B695 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav9d-3A0A075B695 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.59■□□□□ 0.89
Trav9d-3A0A075B695 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.57■□□□□ 0.88
Trav9d-3A0A075B695 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trav9d-3A0A075B695 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trav9d-3A0A075B695 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trav9d-3A0A075B695 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Trav9d-3A0A075B695 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trav9d-3A0A075B695 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav9d-3A0A075B695 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.29■□□□□ 0.84
Trav9d-3A0A075B695 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav9d-3A0A075B695 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav9d-3A0A075B695 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav9d-3A0A075B695 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav9d-3A0A075B695 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.15■□□□□ 0.82
Trav9d-3A0A075B695 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav9d-3A0A075B695 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav9d-3A0A075B695 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav9d-3A0A075B695 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Trav9d-3A0A075B695 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.08■□□□□ 0.81
Trav9d-3A0A075B695 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav9d-3A0A075B695 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Trav9d-3A0A075B695 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav9d-3A0A075B695 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav9d-3A0A075B695 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Trav9d-3A0A075B695 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.03■□□□□ 0.8
Trav9d-3A0A075B695 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Trav9d-3A0A075B695 Gm25238-201ENSMUST00000174914 89 ntBASIC20.01■□□□□ 0.79
Trav9d-3A0A075B695 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC19.99■□□□□ 0.79
Trav9d-3A0A075B695 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC19.98■□□□□ 0.79
Trav9d-3A0A075B695 Gm27325-201ENSMUST00000175467 74 ntBASIC19.95■□□□□ 0.78
Trav9d-3A0A075B695 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav9d-3A0A075B695 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav9d-3A0A075B695 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav9d-3A0A075B695 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav9d-3A0A075B695 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC19.82■□□□□ 0.76
Trav9d-3A0A075B695 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trav9d-3A0A075B695 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Trav9d-3A0A075B695 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Trav9d-3A0A075B695 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav9d-3A0A075B695 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trav9d-3A0A075B695 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav9d-3A0A075B695 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav9d-3A0A075B695 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trav9d-3A0A075B695 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
Trav9d-3A0A075B695 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trav9d-3A0A075B695 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav9d-3A0A075B695 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav9d-3A0A075B695 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav9d-3A0A075B695 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trav9d-3A0A075B695 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trav9d-3A0A075B695 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav9d-3A0A075B695 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC19.55■□□□□ 0.72
Trav9d-3A0A075B695 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav9d-3A0A075B695 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC19.54■□□□□ 0.72
Trav9d-3A0A075B695 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav9d-3A0A075B695 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav9d-3A0A075B695 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 9.9 ms