RNA–Protein interactions for RNA: YJL176C

SWI3, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SWI3, Length 2,478 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI3	YJL176C	HRT3	Q12347	344 aa		4.95	□□□□□ -1.62
SWI3	YJL176C	RPS3	P05750	240 aa	Known RBP	4.94	□□□□□ -1.62
SWI3	YJL176C	SNF1	P06782	633 aa	Known RBP	4.94	□□□□□ -1.62
SWI3	YJL176C	PPR1	P07272	904 aa	Predicted RBP	4.94	□□□□□ -1.62
SWI3	YJL176C	PEX1	P24004	1043 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	TRZ1	P36159	838 aa	Predicted RBP	4.94	□□□□□ -1.62
SWI3	YJL176C	JNM1	P36224	373 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	YMC2	P38087	329 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	SAF1	P38352	637 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	SHQ1	P40486	507 aa	Predicted RBP	4.94	□□□□□ -1.62
SWI3	YJL176C	MMM1	P41800	426 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	IES1	P43579	692 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	VPS25	P47142	202 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	MND1	P53102	219 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	ATG9	Q12142	997 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	SPE1	P08432	466 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	PDE1	P22434	369 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	MET4	P32389	672 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	PEP7	P32609	515 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	PEX28	P38848	579 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	RAD55	P38953	406 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	YAP5	P40574	245 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	YJL045W	P47052	634 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	TAD1	P53065	400 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	GPD1	Q00055	391 aa	Known RBP	4.94	□□□□□ -1.62
SWI3	YJL176C	OPY2	Q06810	360 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	TRE1	Q08919	783 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	DAP1	Q12091	152 aa		4.94	□□□□□ -1.62
SWI3	YJL176C	SPO12	P17123	173 aa		4.93	□□□□□ -1.62
SWI3	YJL176C	LRE1	P25579	583 aa	Known RBP	4.93	□□□□□ -1.62
SWI3	YJL176C	EBP2	P36049	427 aa	Known RBP	4.93	□□□□□ -1.62
SWI3	YJL176C	YTA12	P40341	825 aa		4.93	□□□□□ -1.62
SWI3	YJL176C	MOB1	P40484	314 aa		4.93	□□□□□ -1.62
SWI3	YJL176C	PHO86	P46956	311 aa		4.93	□□□□□ -1.62
SWI3	YJL176C	STR2	P47164	639 aa		4.93	□□□□□ -1.62
SWI3	YJL176C	YNL011C	P53980	444 aa		4.93	□□□□□ -1.62
SWI3	YJL176C	NEW1	Q08972	1196 aa	Known RBP	4.93	□□□□□ -1.62
SWI3	YJL176C	JIP3	O13555	125 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	TRP2	P00899	507 aa	Known RBP	4.92	□□□□□ -1.62
SWI3	YJL176C	HMG2	P12684	1045 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	PDC6	P26263	563 aa	Known RBP	4.92	□□□□□ -1.62
SWI3	YJL176C	SPC110	P32380	944 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	CDC27	P38042	758 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	EXO5	P38289	585 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	RIM4	P38741	713 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	ARO80	Q04052	950 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	YOL098C	Q12496	1037 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	RDH54	P38086	958 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	CBR1	P38626	284 aa	Known RBP	4.92	□□□□□ -1.62
SWI3	YJL176C	HOP2	P53187	214 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	SLG1	P54867	378 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	APC5	Q08683	685 aa		4.92	□□□□□ -1.62
SWI3	YJL176C	SPE3	Q12074	293 aa	Known RBP	4.92	□□□□□ -1.62
SWI3	YJL176C	APE1	P14904	514 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	VMA4	P22203	233 aa	Known RBP	4.91	□□□□□ -1.62
SWI3	YJL176C	MCM2	P29469	868 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	GYP6	P32806	458 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	YBR056W	P38081	501 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	SIF2	P38262	535 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	RPT2	P40327	437 aa	Known RBP	4.91	□□□□□ -1.62
SWI3	YJL176C	ATG3	P40344	310 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	PFD1	P46988	109 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	ERG5	P54781	538 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	UTP5	Q04177	643 aa	Known RBP	4.91	□□□□□ -1.62
SWI3	YJL176C	YCG1	Q06680	1035 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	MDM38	Q08179	573 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	APL4	Q12028	832 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	TSA1	P34760	196 aa	Known RBP	4.91	□□□□□ -1.62
SWI3	YJL176C	YKL050C	P35736	922 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	YBL036C	P38197	257 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	YEL075C	P39972	122 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	GUF1	P46943	645 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	HER2	Q03557	464 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	DDC1	Q08949	612 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	VPS54	Q12071	889 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	NBP2	Q12163	236 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	RRD2	Q12461	358 aa		4.91	□□□□□ -1.62
SWI3	YJL176C	MTF2	P10849	440 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	MRP4	P32902	394 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	TDA3	P38758	523 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	LSB6	P42951	607 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	PSP1	P50896	841 aa	Known RBP	4.9	□□□□□ -1.62
SWI3	YJL176C	PUS2	P53167	370 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	UTP8	P53276	713 aa	Known RBP	4.9	□□□□□ -1.62
SWI3	YJL176C	CEG1	Q01159	459 aa	Predicted RBP	4.9	□□□□□ -1.62
SWI3	YJL176C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.62	not detected
SWI3	YJL176C	MTD1	Q02046	320 aa	Known RBP	4.9	□□□□□ -1.62
SWI3	YJL176C	NSE5	Q03718	556 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	VPS38	Q05919	439 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	YPR117W	Q06116	2489 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	SGO1	Q08490	590 aa		4.9	□□□□□ -1.62
SWI3	YJL176C	AEP2	P22136	580 aa		4.9	□□□□□ -1.63
SWI3	YJL176C	PEX34	P25584	144 aa		4.9	□□□□□ -1.63
SWI3	YJL176C	RRN6	P32786	894 aa		4.9	□□□□□ -1.63
SWI3	YJL176C	YKR051W	P36142	418 aa		4.9	□□□□□ -1.63
SWI3	YJL176C	QNS1	P38795	714 aa	Known RBP	4.9	□□□□□ -1.63
SWI3	YJL176C	SFB3	P38810	929 aa		4.9	□□□□□ -1.63
SWI3	YJL176C	PSY2	P40164	858 aa		4.9	□□□□□ -1.63
SWI3	YJL176C	BTT1	P40314	149 aa	Predicted RBP	4.9	□□□□□ -1.63
SWI3	YJL176C	YGR111W	P53265	400 aa		4.9	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 92.1 ms