Protein–RNA interactions for Protein: Q08949

DDC1, DNA damage checkpoint protein 1, yeastyeast

Predictions only

Length 612 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
DDC1Q08949 YML009W-BYML009W-B 477 nt21.49■■□□□ 1.03
DDC1Q08949 NSR1YGR159C 1245 nt21.25■□□□□ 0.99
DDC1Q08949 NOP1YDL014W 984 nt20.93■□□□□ 0.94
DDC1Q08949 YKL036CYKL036C 393 nt19.45■□□□□ 0.7
DDC1Q08949 MDJ1YFL016C 1536 nt18.75■□□□□ 0.59
DDC1Q08949 Q0297Q0297 156 nt18.4■□□□□ 0.54
DDC1Q08949 SRX1YKL086W 384 nt18.32■□□□□ 0.52
DDC1Q08949 YJL027CYJL027C 417 nt18.17■□□□□ 0.5
DDC1Q08949 SCS3YGL126W 1143 nt17.79■□□□□ 0.44
DDC1Q08949 YCR051WYCR051W 669 nt17.36■□□□□ 0.37
DDC1Q08949 YOL085CYOL085C 342 nt16.85■□□□□ 0.29
DDC1Q08949 DBP2YNL112W 1641 nt16.67■□□□□ 0.26
DDC1Q08949 PKP1YIL042C 1185 nt16.56■□□□□ 0.24
DDC1Q08949 RPP1BYDL130W 321 nt16.5■□□□□ 0.23
DDC1Q08949 TRN1tP(UGG)A 72 nt16.5■□□□□ 0.23
DDC1Q08949 SUF9tP(UGG)F 72 nt16.5■□□□□ 0.23
DDC1Q08949 SUF8tP(UGG)H 72 nt16.5■□□□□ 0.23
DDC1Q08949 tP(UGG)LtP(UGG)L 72 nt16.5■□□□□ 0.23
DDC1Q08949 SUF7tP(UGG)M 72 nt16.5■□□□□ 0.23
DDC1Q08949 tP(UGG)N1tP(UGG)N1 72 nt16.5■□□□□ 0.23
DDC1Q08949 tP(UGG)N2tP(UGG)N2 72 nt16.5■□□□□ 0.23
DDC1Q08949 tP(UGG)O1tP(UGG)O1 72 nt16.5■□□□□ 0.23
DDC1Q08949 SUF11tP(UGG)O2 72 nt16.5■□□□□ 0.23
DDC1Q08949 CCC1YLR220W 969 nt16.29■□□□□ 0.2
DDC1Q08949 YBR190WYBR190W 312 nt15.96■□□□□ 0.15
DDC1Q08949 ATS1YAL020C 1002 nt15.93■□□□□ 0.14
DDC1Q08949 SCJ1YMR214W 1134 nt15.92■□□□□ 0.14
DDC1Q08949 PET122YER153C 765 nt15.75■□□□□ 0.11
DDC1Q08949 RVS167YDR388W 1449 nt15.66■□□□□ 0.1
DDC1Q08949 tP(UGG)O3tP(UGG)O3 72 nt15.63■□□□□ 0.09
DDC1Q08949 SCR1SCR1 522 nt15.59■□□□□ 0.09
DDC1Q08949 RTC3YHR087W 336 nt15.57■□□□□ 0.08
DDC1Q08949 RRN5YLR141W 1092 nt15.29■□□□□ 0.04
DDC1Q08949 SHR5YOL110W 714 nt15.17■□□□□ 0.02
DDC1Q08949 YDJ1YNL064C 1230 nt15.13■□□□□ 0.01
DDC1Q08949 YER088W-BYER088W-B 147 nt15.01□□□□□ -0.01
DDC1Q08949 RSB1YOR049C 1065 nt15.01□□□□□ -0.01
DDC1Q08949 PST2YDR032C 597 nt14.75□□□□□ -0.05
DDC1Q08949 GAR1YHR089C 618 nt14.75□□□□□ -0.05
DDC1Q08949 DEP1YAL013W 1218 nt14.67□□□□□ -0.06
DDC1Q08949 URN1YPR152C 1398 nt14.65□□□□□ -0.06
DDC1Q08949 YNL208WYNL208W 600 nt14.47□□□□□ -0.09
DDC1Q08949 RPN10YHR200W 807 nt14.45□□□□□ -0.1
DDC1Q08949 OPI9YLR338W 858 nt14.43□□□□□ -0.1
DDC1Q08949 PUT4YOR348C 1884 nt14.4□□□□□ -0.1
DDC1Q08949 SAH1YER043C 1350 nt14.29□□□□□ -0.12
DDC1Q08949 TIR1YER011W 765 nt14.26□□□□□ -0.13
DDC1Q08949 YKL097CYKL097C 411 nt14.21□□□□□ -0.13
DDC1Q08949 ARE1YCR048W 1833 nt14.19□□□□□ -0.14
DDC1Q08949 SHU1YHL006C 453 nt14.12□□□□□ -0.15
DDC1Q08949 SSA1YAL005C 1929 nt14.08□□□□□ -0.16
DDC1Q08949 PUN1YLR414C 792 nt14□□□□□ -0.17
DDC1Q08949 YHR049C-AYHR049C-A 297 nt13.99□□□□□ -0.17
DDC1Q08949 YJR018WYJR018W 363 nt13.99□□□□□ -0.17
DDC1Q08949 POA1YBR022W 534 nt13.94□□□□□ -0.18
DDC1Q08949 SRB2YHR041C 633 nt13.89□□□□□ -0.19
DDC1Q08949 YJR120WYJR120W 351 nt13.85□□□□□ -0.19
DDC1Q08949 YAL037C-BYAL037C-B 975 nt13.83□□□□□ -0.2
DDC1Q08949 PTC2YER089C 1395 nt13.8□□□□□ -0.2
DDC1Q08949 RPP2BYDR382W 333 nt13.72□□□□□ -0.21
DDC1Q08949 WWM1YFL010C 636 nt13.66□□□□□ -0.22
DDC1Q08949 BUD23YCR047C 828 nt13.65□□□□□ -0.22
DDC1Q08949 YOR139CYOR139C 393 nt13.65□□□□□ -0.22
DDC1Q08949 BSC6YOL137W 1494 nt13.62□□□□□ -0.23
DDC1Q08949 YGR021WYGR021W 873 nt13.62□□□□□ -0.23
DDC1Q08949 NAB2YGL122C 1578 nt13.61□□□□□ -0.23
DDC1Q08949 HOM6YJR139C 1080 nt13.6□□□□□ -0.23
DDC1Q08949 MNP1YGL068W 585 nt13.55□□□□□ -0.24
DDC1Q08949 SSA3YBL075C 1950 nt13.53□□□□□ -0.24
DDC1Q08949 BDH2YAL061W 1254 nt13.5□□□□□ -0.25
DDC1Q08949 NPL3YDR432W 1245 nt13.47□□□□□ -0.25
DDC1Q08949 FIS1YIL065C 468 nt13.47□□□□□ -0.25
DDC1Q08949 DAL1YIR027C 1383 nt13.46□□□□□ -0.25
DDC1Q08949 INM2YDR287W 879 nt13.46□□□□□ -0.25
DDC1Q08949 YFL021C-AYFL021C-A 855 nt13.44□□□□□ -0.26
DDC1Q08949 RKM5YLR137W 1104 nt13.39□□□□□ -0.27
DDC1Q08949 FPR4YLR449W 1179 nt13.39□□□□□ -0.27
DDC1Q08949 YBL100CYBL100C 315 nt13.37□□□□□ -0.27
DDC1Q08949 YOL037CYOL037C 354 nt13.37□□□□□ -0.27
DDC1Q08949 LSM3YLR438C-A 270 nt13.35□□□□□ -0.27
DDC1Q08949 PHO4YFR034C 939 nt13.34□□□□□ -0.27
DDC1Q08949 FUN26YAL022C 1554 nt13.22□□□□□ -0.29
DDC1Q08949 TRM9YML014W 840 nt13.19□□□□□ -0.3
DDC1Q08949 tM(CAU)CtM(CAU)C 72 nt13.1□□□□□ -0.31
DDC1Q08949 IMT4tM(CAU)E 72 nt13.1□□□□□ -0.31
DDC1Q08949 IMT3tM(CAU)J3 72 nt13.1□□□□□ -0.31
DDC1Q08949 IMT1tM(CAU)O1 72 nt13.1□□□□□ -0.31
DDC1Q08949 IMT2tM(CAU)P 72 nt13.1□□□□□ -0.31
DDC1Q08949 CCT6YDR188W 1641 nt13.09□□□□□ -0.31
DDC1Q08949 YLR281CYLR281C 468 nt13.05□□□□□ -0.32
DDC1Q08949 YPS1YLR120C 1710 nt13.04□□□□□ -0.32
DDC1Q08949 YDR095CYDR095C 411 nt12.99□□□□□ -0.33
DDC1Q08949 WHI5YOR083W 888 nt12.98□□□□□ -0.33
DDC1Q08949 ALF1YNL148C 765 nt12.97□□□□□ -0.33
DDC1Q08949 PUS2YGL063W 1113 nt12.94□□□□□ -0.34
DDC1Q08949 SUF2tP(AGG)C 72 nt12.94□□□□□ -0.34
DDC1Q08949 SUF10tP(AGG)N 72 nt12.94□□□□□ -0.34
DDC1Q08949 SPT5YML010W 3192 nt12.93□□□□□ -0.34
DDC1Q08949 YLR154C-GYLR154C-G 150 nt12.86□□□□□ -0.35
DDC1Q08949 YHR165W-AYHR165W-A 312 nt12.85□□□□□ -0.35
Retrieved 100 of 7,029 protein–RNA pairs in 8.1 ms