RNA–Protein interactions for RNA: YCR065W

HCM1, Transcript of Forkhead transcription factor, yeast

Gene HCM1, Length 1,695 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HCM1	YCR065W	TUF1	P02992	437 aa	Known RBP	4.6	□□□□□ -1.67
HCM1	YCR065W	HNM1	P19807	563 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	SRM1	P21827	482 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	GFD2	P25370	566 aa	Known RBP	4.6	□□□□□ -1.67
HCM1	YCR065W	POL4	P25615	582 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	SSH4	P32343	579 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	SMY1	P32364	656 aa	Known RBP	4.6	□□□□□ -1.67
HCM1	YCR065W	HIR1	P32479	840 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	MRP8	P35719	219 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	NUP82	P40368	713 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	SAP185	P40856	1058 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	VTC2	P43585	828 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	TAN1	P53072	289 aa	Predicted RBP	4.6	□□□□□ -1.67
HCM1	YCR065W	CWC21	Q03375	135 aa	Known RBP	4.6	□□□□□ -1.67
HCM1	YCR065W	RAD33	Q04231	177 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	YDR286C	Q05530	114 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	DBP9	Q06218	594 aa	Known RBP	4.6	□□□□□ -1.67
HCM1	YCR065W	GLE1	Q12315	538 aa		4.6	□□□□□ -1.67
HCM1	YCR065W	BI4	P03879	638 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	MER1	P16523	270 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	KAR3	P17119	729 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	MRPL25	P23369	157 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	CDC60	P26637	1090 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	LTV1	P34078	463 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	LRG1	P35688	1017 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	YKL151C	P36059	337 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	NOP4	P37838	685 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	OTU2	P38747	307 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	GCD10	P41814	478 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	SHE10	P53075	577 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	YNR029C	P53729	429 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	ZDS2	P54786	942 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	REX2	P54964	269 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	NAN1	Q02931	896 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	HRQ1	Q05549	1077 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	RPN7	Q06103	429 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	NBA1	Q08229	501 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	PGC1	Q08959	321 aa		4.59	□□□□□ -1.67
HCM1	YCR065W	BMS1	Q08965	1183 aa	Known RBP	4.59	□□□□□ -1.67
HCM1	YCR065W	CLN1	P20437	546 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	PGS1	P25578	521 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	MSH2	P25847	964 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	CCT3	P39077	534 aa	Known RBP	4.58	□□□□□ -1.68
HCM1	YCR065W	ARB1	P40024	610 aa	Known RBP	4.58	□□□□□ -1.68
HCM1	YCR065W	DSL1	P53847	754 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	ORC3	P54790	616 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
HCM1	YCR065W	SWA2	Q06677	668 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	PPM2	Q08282	695 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	APC2	Q12440	853 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	YOL087C	Q99247	1116 aa		4.58	□□□□□ -1.68
HCM1	YCR065W	KDX1	P36005	433 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	POL12	P38121	705 aa	Predicted RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	YER034W	P40022	185 aa	Known RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	UBX4	P54730	416 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
HCM1	YCR065W	SND1	Q04007	877 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	COG8	Q04632	607 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	FMP25	Q08023	583 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	RSB1	Q08417	382 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	YDL177C	Q12257	170 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	RIB2	Q12362	591 aa	Known RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	CIT1	P00890	479 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	PGI1	P12709	554 aa	Known RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	YEF3	P16521	1044 aa	Known RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	RPB4	P20433	221 aa	Predicted RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	DAL80	P26343	269 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	SWC3	P31376	625 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	MRE11	P32829	692 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	NUP120	P35729	1037 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	PBY1	P38254	753 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	YHR020W	P38708	688 aa	Known RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	POP2	P39008	433 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	GEM1	P39722	662 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	ESL1	P40456	1118 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	CCM1	P48237	864 aa	Predicted RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	HUL5	P53119	910 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	ATG38	Q05789	226 aa	Known RBP	4.57	□□□□□ -1.68
HCM1	YCR065W	NFI1	Q12216	726 aa		4.57	□□□□□ -1.68
HCM1	YCR065W	RPC82	P32349	654 aa		4.56	□□□□□ -1.68
HCM1	YCR065W	VMA8	P32610	256 aa	Known RBP	4.56	□□□□□ -1.68
HCM1	YCR065W	SET2	P46995	733 aa	Known RBP	4.56	□□□□□ -1.68
HCM1	YCR065W	BNA1	P47096	177 aa		4.56	□□□□□ -1.68
HCM1	YCR065W	MTC3	P53077	123 aa		4.56	□□□□□ -1.68
HCM1	YCR065W	DUS3	Q06053	668 aa	Known RBP	4.56	□□□□□ -1.68
HCM1	YCR065W	SVS1	Q12254	260 aa		4.56	□□□□□ -1.68
HCM1	YCR065W	YRM1	Q12340	786 aa		4.56	□□□□□ -1.68
HCM1	YCR065W	RRP36	Q12481	300 aa	Predicted RBP	4.56	□□□□□ -1.68
HCM1	YCR065W	PHO8	P11491	566 aa		4.55	□□□□□ -1.68
HCM1	YCR065W	GLK1	P17709	500 aa	Known RBP	4.55	□□□□□ -1.68
HCM1	YCR065W	RPL8B	P29453	256 aa	Known RBP	4.55	□□□□□ -1.68
HCM1	YCR065W	HBS1	P32769	611 aa	Known RBP	4.55	□□□□□ -1.68
HCM1	YCR065W	SWD1	P39706	426 aa		4.55	□□□□□ -1.68
HCM1	YCR065W	NPP2	P39997	493 aa		4.55	□□□□□ -1.68
HCM1	YCR065W	RIC1	P40395	1056 aa		4.55	□□□□□ -1.68
HCM1	YCR065W	GPP1	P41277	250 aa	Known RBP	4.55	□□□□□ -1.68
HCM1	YCR065W	HOP2	P53187	214 aa		4.55	□□□□□ -1.68
HCM1	YCR065W	PNG1	Q02890	363 aa		4.55	□□□□□ -1.68
HCM1	YCR065W	SPN1	Q06505	410 aa	Predicted RBP	4.55	□□□□□ -1.68
HCM1	YCR065W	YDR306C	Q06640	478 aa		4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms