Protein–RNA interactions for Protein: P25847

MSH2, DNA mismatch repair protein MSH2, yeastyeast

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH2P25847 YML009W-BYML009W-B 477 nt20.57■□□□□ 0.88
MSH2P25847 NSR1YGR159C 1245 nt20.35■□□□□ 0.85
MSH2P25847 NOP1YDL014W 984 nt20.23■□□□□ 0.83
MSH2P25847 YKL036CYKL036C 393 nt19.15■□□□□ 0.66
MSH2P25847 MDJ1YFL016C 1536 nt18.34■□□□□ 0.53
MSH2P25847 YJL027CYJL027C 417 nt17.94■□□□□ 0.46
MSH2P25847 Q0297Q0297 156 nt17.91■□□□□ 0.46
MSH2P25847 SRX1YKL086W 384 nt17.7■□□□□ 0.42
MSH2P25847 SCS3YGL126W 1143 nt17.67■□□□□ 0.42
MSH2P25847 YCR051WYCR051W 669 nt16.77■□□□□ 0.28
MSH2P25847 YOL085CYOL085C 342 nt16.57■□□□□ 0.24
MSH2P25847 SCJ1YMR214W 1134 nt16.36■□□□□ 0.21
MSH2P25847 PKP1YIL042C 1185 nt16.21■□□□□ 0.19
MSH2P25847 DBP2YNL112W 1641 nt16.06■□□□□ 0.16
MSH2P25847 RPP1BYDL130W 321 nt16.05■□□□□ 0.16
MSH2P25847 ATS1YAL020C 1002 nt15.96■□□□□ 0.15
MSH2P25847 TRN1tP(UGG)A 72 nt15.7■□□□□ 0.1
MSH2P25847 SUF9tP(UGG)F 72 nt15.7■□□□□ 0.1
MSH2P25847 SUF8tP(UGG)H 72 nt15.7■□□□□ 0.1
MSH2P25847 tP(UGG)LtP(UGG)L 72 nt15.7■□□□□ 0.1
MSH2P25847 SUF7tP(UGG)M 72 nt15.7■□□□□ 0.1
MSH2P25847 tP(UGG)N1tP(UGG)N1 72 nt15.7■□□□□ 0.1
MSH2P25847 tP(UGG)N2tP(UGG)N2 72 nt15.7■□□□□ 0.1
MSH2P25847 tP(UGG)O1tP(UGG)O1 72 nt15.7■□□□□ 0.1
MSH2P25847 SUF11tP(UGG)O2 72 nt15.7■□□□□ 0.1
MSH2P25847 YBR190WYBR190W 312 nt15.65■□□□□ 0.1
MSH2P25847 CCC1YLR220W 969 nt15.57■□□□□ 0.08
MSH2P25847 RTC3YHR087W 336 nt15.38■□□□□ 0.05
MSH2P25847 PET122YER153C 765 nt15.26■□□□□ 0.03
MSH2P25847 SCR1SCR1 522 nt15.23■□□□□ 0.03
MSH2P25847 RVS167YDR388W 1449 nt15.11■□□□□ 0.01
MSH2P25847 tP(UGG)O3tP(UGG)O3 72 nt15.01□□□□□ -0.01
MSH2P25847 SSA3YBL075C 1950 nt14.94□□□□□ -0.02
MSH2P25847 RRN5YLR141W 1092 nt14.87□□□□□ -0.03
MSH2P25847 PST2YDR032C 597 nt14.7□□□□□ -0.06
MSH2P25847 RSB1YOR049C 1065 nt14.69□□□□□ -0.06
MSH2P25847 YER088W-BYER088W-B 147 nt14.59□□□□□ -0.07
MSH2P25847 YDJ1YNL064C 1230 nt14.54□□□□□ -0.08
MSH2P25847 Q0182Q0182 405 nt14.52□□□□□ -0.09
MSH2P25847 SHR5YOL110W 714 nt14.51□□□□□ -0.09
MSH2P25847 YKL097CYKL097C 411 nt14.37□□□□□ -0.11
MSH2P25847 PUT4YOR348C 1884 nt14.35□□□□□ -0.11
MSH2P25847 URN1YPR152C 1398 nt14.27□□□□□ -0.12
MSH2P25847 DEP1YAL013W 1218 nt14.25□□□□□ -0.13
MSH2P25847 GAR1YHR089C 618 nt14.08□□□□□ -0.16
MSH2P25847 OPI9YLR338W 858 nt14.08□□□□□ -0.16
MSH2P25847 SAH1YER043C 1350 nt14.08□□□□□ -0.16
MSH2P25847 MOT3YMR070W 1473 nt14.04□□□□□ -0.16
MSH2P25847 ARE1YCR048W 1833 nt14.03□□□□□ -0.16
MSH2P25847 RPN10YHR200W 807 nt14.01□□□□□ -0.17
MSH2P25847 SHU1YHL006C 453 nt13.96□□□□□ -0.17
MSH2P25847 POA1YBR022W 534 nt13.95□□□□□ -0.18
MSH2P25847 YNL208WYNL208W 600 nt13.94□□□□□ -0.18
MSH2P25847 YHR049C-AYHR049C-A 297 nt13.92□□□□□ -0.18
MSH2P25847 YOR139CYOR139C 393 nt13.71□□□□□ -0.21
MSH2P25847 PUN1YLR414C 792 nt13.69□□□□□ -0.22
MSH2P25847 BSC6YOL137W 1494 nt13.67□□□□□ -0.22
MSH2P25847 BUD23YCR047C 828 nt13.63□□□□□ -0.23
MSH2P25847 TIR1YER011W 765 nt13.61□□□□□ -0.23
MSH2P25847 YJR018WYJR018W 363 nt13.61□□□□□ -0.23
MSH2P25847 PTC2YER089C 1395 nt13.57□□□□□ -0.24
MSH2P25847 YAL037C-BYAL037C-B 975 nt13.54□□□□□ -0.24
MSH2P25847 NPL3YDR432W 1245 nt13.47□□□□□ -0.25
MSH2P25847 SSA1YAL005C 1929 nt13.4□□□□□ -0.26
MSH2P25847 NAB2YGL122C 1578 nt13.4□□□□□ -0.26
MSH2P25847 YJR120WYJR120W 351 nt13.3□□□□□ -0.28
MSH2P25847 RPP2BYDR382W 333 nt13.28□□□□□ -0.28
MSH2P25847 FPR4YLR449W 1179 nt13.24□□□□□ -0.29
MSH2P25847 SPT5YML010W 3192 nt13.22□□□□□ -0.29
MSH2P25847 YGR021WYGR021W 873 nt13.2□□□□□ -0.3
MSH2P25847 SRB2YHR041C 633 nt13.2□□□□□ -0.3
MSH2P25847 DAL1YIR027C 1383 nt13.19□□□□□ -0.3
MSH2P25847 FIS1YIL065C 468 nt13.18□□□□□ -0.3
MSH2P25847 HOM6YJR139C 1080 nt13.18□□□□□ -0.3
MSH2P25847 YOL037CYOL037C 354 nt13.18□□□□□ -0.3
MSH2P25847 MNP1YGL068W 585 nt13.15□□□□□ -0.3
MSH2P25847 tM(CAU)CtM(CAU)C 72 nt13.14□□□□□ -0.31
MSH2P25847 IMT4tM(CAU)E 72 nt13.14□□□□□ -0.31
MSH2P25847 IMT3tM(CAU)J3 72 nt13.14□□□□□ -0.31
MSH2P25847 IMT1tM(CAU)O1 72 nt13.14□□□□□ -0.31
MSH2P25847 IMT2tM(CAU)P 72 nt13.14□□□□□ -0.31
MSH2P25847 INM2YDR287W 879 nt13.13□□□□□ -0.31
MSH2P25847 WWM1YFL010C 636 nt13.08□□□□□ -0.32
MSH2P25847 PHO4YFR034C 939 nt13.07□□□□□ -0.32
MSH2P25847 YBL100CYBL100C 315 nt12.99□□□□□ -0.33
MSH2P25847 RKM5YLR137W 1104 nt12.97□□□□□ -0.33
MSH2P25847 BDH2YAL061W 1254 nt12.94□□□□□ -0.34
MSH2P25847 SSA4YER103W 1929 nt12.92□□□□□ -0.34
MSH2P25847 YFL021C-AYFL021C-A 855 nt12.9□□□□□ -0.34
MSH2P25847 YPS1YLR120C 1710 nt12.85□□□□□ -0.35
MSH2P25847 PUS2YGL063W 1113 nt12.83□□□□□ -0.36
MSH2P25847 YLR281CYLR281C 468 nt12.83□□□□□ -0.36
MSH2P25847 MEP2YNL142W 1500 nt12.83□□□□□ -0.36
MSH2P25847 FUN26YAL022C 1554 nt12.81□□□□□ -0.36
MSH2P25847 YHR165W-AYHR165W-A 312 nt12.8□□□□□ -0.36
MSH2P25847 TRM9YML014W 840 nt12.76□□□□□ -0.37
MSH2P25847 YDR095CYDR095C 411 nt12.75□□□□□ -0.37
MSH2P25847 LSM3YLR438C-A 270 nt12.72□□□□□ -0.37
MSH2P25847 ALF1YNL148C 765 nt12.72□□□□□ -0.37
MSH2P25847 WHI5YOR083W 888 nt12.69□□□□□ -0.38
Retrieved 100 of 7,029 protein–RNA pairs in 12.6 ms