RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W RPS7BP48164 190 aaKnown RBP15.43■□□□□ 0.06
DEP1YAL013W COQ9Q05779 260 aa15.43■□□□□ 0.06
DEP1YAL013W DED1P06634 604 aaKnown RBP15.42■□□□□ 0.06
DEP1YAL013W PHO8P11491 566 aa15.42■□□□□ 0.06
DEP1YAL013W DBP5P20449 482 aaKnown RBP15.42■□□□□ 0.06
DEP1YAL013W TIM23P32897 222 aa15.42■□□□□ 0.06
DEP1YAL013W SPO75Q07798 868 aa15.42■□□□□ 0.06
DEP1YAL013W APL4Q12028 832 aa15.42■□□□□ 0.06
DEP1YAL013W CWC2Q12046 339 aaPredicted RBP15.42■□□□□ 0.06
DEP1YAL013W FAL1Q12099 399 aaKnown RBP15.42■□□□□ 0.06
DEP1YAL013W SRF1Q12516 437 aa15.42■□□□□ 0.06
DEP1YAL013W YDR461C-AQ2V2P7 80 aa15.42■□□□□ 0.06
DEP1YAL013W KIN82P25341 720 aa15.41■□□□□ 0.06
DEP1YAL013W CDC48P25694 835 aaKnown RBP15.41■□□□□ 0.06
DEP1YAL013W APL1P27351 700 aa15.41■□□□□ 0.06
DEP1YAL013W MNN4P36044 1178 aa15.41■□□□□ 0.06
DEP1YAL013W VFA1P40080 203 aa15.41■□□□□ 0.06
DEP1YAL013W LCB2P40970 561 aa15.41■□□□□ 0.06
DEP1YAL013W CCM1P48237 864 aaPredicted RBP15.41■□□□□ 0.06
DEP1YAL013W MDR1P53258 950 aa15.41■□□□□ 0.06
DEP1YAL013W CTR9P89105 1077 aa15.41■□□□□ 0.06
DEP1YAL013W SMC5Q08204 1093 aa15.41■□□□□ 0.06
DEP1YAL013W MET7Q08645 548 aa15.41■□□□□ 0.06
DEP1YAL013W HMI1Q12039 706 aa15.41■□□□□ 0.06
DEP1YAL013W COT1P32798 439 aa15.4■□□□□ 0.06
DEP1YAL013W LEO1P38439 464 aa15.4■□□□□ 0.06
DEP1YAL013W ERC1P38767 581 aa15.4■□□□□ 0.06
DEP1YAL013W FIG4P42837 879 aa15.4■□□□□ 0.06
DEP1YAL013W VPS53P47061 822 aa15.4■□□□□ 0.06
DEP1YAL013W SVF1Q05515 481 aa15.4■□□□□ 0.06
DEP1YAL013W SCP160P06105 1222 aaKnown RBP RIP-Chip data15.39■□□□□ 0.05not detected
DEP1YAL013W SSB1P11484 613 aaKnown RBP15.39■□□□□ 0.05
DEP1YAL013W POX1P13711 748 aa15.39■□□□□ 0.05
DEP1YAL013W NAM7P30771 971 aaKnown RBP15.39■□□□□ 0.05
DEP1YAL013W ATG19P35193 415 aa15.39■□□□□ 0.05
DEP1YAL013W MNR2P35724 969 aa15.39■□□□□ 0.05
DEP1YAL013W SSB2P40150 613 aaKnown RBP15.39■□□□□ 0.05
DEP1YAL013W TAM41P53230 385 aa15.39■□□□□ 0.05
DEP1YAL013W CDC53Q12018 815 aaKnown RBP15.39■□□□□ 0.05
DEP1YAL013W STU2P46675 888 aa15.38■□□□□ 0.05
DEP1YAL013W AVT1P47082 602 aa15.38■□□□□ 0.05
DEP1YAL013W DUS1P53759 423 aaKnown RBP15.38■□□□□ 0.05
DEP1YAL013W YCG1Q06680 1035 aa15.38■□□□□ 0.05
DEP1YAL013W GPI13Q07830 1017 aa15.38■□□□□ 0.05
DEP1YAL013W RLP24Q07915 199 aaKnown RBP15.38■□□□□ 0.05
DEP1YAL013W ATG9Q12142 997 aa15.38■□□□□ 0.05
DEP1YAL013W NOC3Q07896 663 aaPredicted RBP15.37■□□□□ 0.05
DEP1YAL013W NEW1Q08972 1196 aaKnown RBP15.37■□□□□ 0.05
DEP1YAL013W YLL058WQ12198 575 aa15.37■□□□□ 0.05
DEP1YAL013W EFT1P32324 842 aaKnown RBP15.36■□□□□ 0.05
DEP1YAL013W FLR1P38124 548 aa15.36■□□□□ 0.05
DEP1YAL013W CCC2P38995 1004 aa15.36■□□□□ 0.05
DEP1YAL013W RTT102P53330 157 aa15.36■□□□□ 0.05
DEP1YAL013W YLR287CQ05881 355 aa15.36■□□□□ 0.05
DEP1YAL013W IES4Q08561 116 aa15.36■□□□□ 0.05
DEP1YAL013W PLP2Q12017 286 aa15.36■□□□□ 0.05
DEP1YAL013W ICL2Q12031 575 aa15.36■□□□□ 0.05
DEP1YAL013W IRE1P32361 1115 aa15.35■□□□□ 0.05
DEP1YAL013W VPS35P34110 944 aa15.35■□□□□ 0.05
DEP1YAL013W PCH2P38126 564 aa15.35■□□□□ 0.05
DEP1YAL013W ALF1P53904 254 aa15.35■□□□□ 0.05
DEP1YAL013W DON1Q05610 365 aa15.35■□□□□ 0.05
DEP1YAL013W KTR2P33550 425 aa15.34■□□□□ 0.05
DEP1YAL013W PRY3P47033 881 aa15.34■□□□□ 0.05
DEP1YAL013W ERG5P54781 538 aa15.34■□□□□ 0.05
DEP1YAL013W UME1Q03010 460 aa15.34■□□□□ 0.05
DEP1YAL013W RRP6Q12149 733 aaKnown RBP15.34■□□□□ 0.05
DEP1YAL013W PPR1P07272 904 aaPredicted RBP15.33■□□□□ 0.04
DEP1YAL013W TUP1P16649 713 aa15.33■□□□□ 0.04
DEP1YAL013W SPO12P17123 173 aa15.33■□□□□ 0.04
DEP1YAL013W UBC1P21734 215 aaKnown RBP15.33■□□□□ 0.04
DEP1YAL013W MFT1P33441 392 aaKnown RBP15.33■□□□□ 0.04
DEP1YAL013W EAF5P39995 279 aa15.33■□□□□ 0.04
DEP1YAL013W VPS38Q05919 439 aa15.33■□□□□ 0.04
DEP1YAL013W MOT1P32333 1867 aa15.33■□□□□ 0.04
DEP1YAL013W KSP1P38691 1029 aaKnown RBP15.32■□□□□ 0.04
DEP1YAL013W SDS3P40505 327 aa15.32■□□□□ 0.04
DEP1YAL013W PSP2P50109 593 aaKnown RBP15.32■□□□□ 0.04
DEP1YAL013W VTC3Q02725 835 aa15.32■□□□□ 0.04
DEP1YAL013W GIR2Q03768 265 aaPredicted RBP15.32■□□□□ 0.04
DEP1YAL013W YLR297WQ05899 129 aa15.32■□□□□ 0.04
DEP1YAL013W MAS2P11914 482 aa15.31■□□□□ 0.04
DEP1YAL013W BCS1P32839 456 aa15.31■□□□□ 0.04
DEP1YAL013W ATG3P40344 310 aa15.31■□□□□ 0.04
DEP1YAL013W SHQ1P40486 507 aaPredicted RBP15.31■□□□□ 0.04
DEP1YAL013W NCS6P53088 359 aa15.31■□□□□ 0.04
DEP1YAL013W YNL146WP53906 100 aa15.31■□□□□ 0.04
DEP1YAL013W TIM8P57744 87 aa15.31■□□□□ 0.04
DEP1YAL013W YML020WQ03722 664 aa15.31■□□□□ 0.04
DEP1YAL013W ESC2Q06340 456 aa15.31■□□□□ 0.04
DEP1YAL013W MLH2Q07980 695 aa15.31■□□□□ 0.04
DEP1YAL013W CHS2P14180 963 aa15.3■□□□□ 0.04
DEP1YAL013W DBP1P24784 617 aaKnown RBP15.3■□□□□ 0.04
DEP1YAL013W DPH2P32461 534 aa15.3■□□□□ 0.04
DEP1YAL013W JSN1P47135 1091 aaKnown RBP RIP-Chip data15.3■□□□□ 0.04not detected
DEP1YAL013W COS5P47187 383 aa15.3■□□□□ 0.04
DEP1YAL013W TAD1P53065 400 aa15.3■□□□□ 0.04
DEP1YAL013W ENV11P53246 860 aa15.3■□□□□ 0.04
DEP1YAL013W SEC23P15303 768 aaKnown RBP15.29■□□□□ 0.04
DEP1YAL013W YAP5P40574 245 aa15.29■□□□□ 0.04
Retrieved 100 of 5,963 RNA–protein pairs in 55.9 ms