RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W PER1P25625 357 aa7.03□□□□□ -1.28
CAF40YNL288W MOT2P34909 587 aaKnown RBP7.03□□□□□ -1.28
CAF40YNL288W SOL4P53315 255 aa7.03□□□□□ -1.28
CAF40YNL288W RPT6Q01939 405 aaKnown RBP7.03□□□□□ -1.28
CAF40YNL288W YMR265CQ03508 461 aaKnown RBP7.03□□□□□ -1.28
CAF40YNL288W TFC6Q06339 672 aa7.03□□□□□ -1.28
CAF40YNL288W PGA3Q12746 312 aaKnown RBP7.03□□□□□ -1.28
CAF40YNL288W SEC20P28791 383 aa7.02□□□□□ -1.29
CAF40YNL288W RPL8BP29453 256 aaKnown RBP7.02□□□□□ -1.29
CAF40YNL288W MCD4P36051 919 aa7.02□□□□□ -1.29
CAF40YNL288W YTA6P40328 754 aa7.02□□□□□ -1.29
CAF40YNL288W LYS5P50113 272 aa7.02□□□□□ -1.29
CAF40YNL288W FOL1P53848 824 aa7.02□□□□□ -1.29
CAF40YNL288W VPS30Q02948 557 aa7.02□□□□□ -1.29
CAF40YNL288W YML037CQ03703 340 aa7.02□□□□□ -1.29
CAF40YNL288W MYO5Q04439 1219 aaKnown RBP7.02□□□□□ -1.29
CAF40YNL288W DIT1P21623 536 aa7.01□□□□□ -1.29
CAF40YNL288W PDC6P26263 563 aaKnown RBP7.01□□□□□ -1.29
CAF40YNL288W CEM1P39525 442 aa7.01□□□□□ -1.29
CAF40YNL288W YIR014WP40570 242 aa7.01□□□□□ -1.29
CAF40YNL288W SPR3P41901 512 aa7.01□□□□□ -1.29
CAF40YNL288W HDA1P53973 706 aa7.01□□□□□ -1.29
CAF40YNL288W RPS31P05759 152 aaKnown RBP7□□□□□ -1.29
CAF40YNL288W NUC1P08466 329 aa7□□□□□ -1.29
CAF40YNL288W FBP1P09201 348 aa7□□□□□ -1.29
CAF40YNL288W MATALPHA2P0CY08 210 aa7□□□□□ -1.29
CAF40YNL288W HMLALPHA2P0CY09 210 aa7□□□□□ -1.29
CAF40YNL288W KRS1P15180 591 aaKnown RBP7□□□□□ -1.29
CAF40YNL288W SAM2P19358 384 aaKnown RBP7□□□□□ -1.29
CAF40YNL288W MAL31P38156 614 aa7□□□□□ -1.29
CAF40YNL288W ERG7P38604 731 aa7□□□□□ -1.29
CAF40YNL288W VPS45P38932 577 aa7□□□□□ -1.29
CAF40YNL288W YKE2P52553 114 aa7□□□□□ -1.29
CAF40YNL288W CFT2Q12102 859 aaPredicted RBP7□□□□□ -1.29
CAF40YNL288W TRS33Q99394 268 aa7□□□□□ -1.29
CAF40YNL288W ACE2P21192 770 aa6.99□□□□□ -1.29
CAF40YNL288W RNR3P21672 869 aaKnown RBP6.99□□□□□ -1.29
CAF40YNL288W CDC60P26637 1090 aaKnown RBP6.99□□□□□ -1.29
CAF40YNL288W TRK2P28584 889 aa6.99□□□□□ -1.29
CAF40YNL288W YKR018CP36114 725 aa6.99□□□□□ -1.29
CAF40YNL288W OPY1P38271 328 aa6.99□□□□□ -1.29
CAF40YNL288W CSM2P40465 213 aa6.99□□□□□ -1.29
CAF40YNL288W VID28P40547 921 aa6.99□□□□□ -1.29
CAF40YNL288W LSB1P53281 241 aa6.99□□□□□ -1.29
CAF40YNL288W YNL165WP53891 406 aa6.99□□□□□ -1.29
CAF40YNL288W ARP5P53946 755 aa6.99□□□□□ -1.29
CAF40YNL288W UBX5Q06682 500 aa6.99□□□□□ -1.29
CAF40YNL288W TY3A-GQ12173 290 aa6.99□□□□□ -1.29
CAF40YNL288W TY3A-IQ99219 290 aa6.99□□□□□ -1.29
CAF40YNL288W Q0182Q9ZZW1 134 aa6.99□□□□□ -1.29
CAF40YNL288W MLF3P32047 452 aa6.98□□□□□ -1.29
CAF40YNL288W TOM71P38825 639 aaKnown RBP6.98□□□□□ -1.29
CAF40YNL288W KRE33P53914 1056 aaKnown RBP6.98□□□□□ -1.29
CAF40YNL288W YAF9P53930 226 aa6.98□□□□□ -1.29
CAF40YNL288W YOR111WQ99210 232 aa6.98□□□□□ -1.29
CAF40YNL288W SRP54P20424 541 aaKnown RBP6.97□□□□□ -1.29
CAF40YNL288W BMH2P34730 273 aaKnown RBP6.97□□□□□ -1.29
CAF40YNL288W MRPL16P38064 232 aa6.97□□□□□ -1.29
CAF40YNL288W PHO88P38264 188 aaPredicted RBP6.97□□□□□ -1.29
CAF40YNL288W YHL017WP38745 532 aa6.97□□□□□ -1.29
CAF40YNL288W AKR1P39010 764 aa6.97□□□□□ -1.29
CAF40YNL288W GPB2P39717 880 aa6.97□□□□□ -1.29
CAF40YNL288W TPM2P40414 161 aa6.97□□□□□ -1.29
CAF40YNL288W NCS6P53088 359 aa6.97□□□□□ -1.29
CAF40YNL288W ALD6P54115 500 aaKnown RBP6.97□□□□□ -1.29
CAF40YNL288W ADE12P80210 433 aaKnown RBP6.97□□□□□ -1.29
CAF40YNL288W MDM1Q01846 1127 aa6.97□□□□□ -1.29
CAF40YNL288W YML083CQ04526 418 aa6.97□□□□□ -1.29
CAF40YNL288W YLR225CQ05948 407 aaKnown RBP6.97□□□□□ -1.29
CAF40YNL288W PSK2Q08217 1101 aa6.97□□□□□ -1.29
CAF40YNL288W NOB1Q08444 459 aaKnown RBP6.97□□□□□ -1.29
CAF40YNL288W RAD18P10862 487 aa6.96□□□□□ -1.3
CAF40YNL288W SRS2P12954 1174 aa6.96□□□□□ -1.3
CAF40YNL288W VMA2P16140 517 aaKnown RBP6.96□□□□□ -1.3
CAF40YNL288W SCD5P34758 872 aa6.96□□□□□ -1.3
CAF40YNL288W SGD1Q06132 899 aa6.96□□□□□ -1.3
CAF40YNL288W UTP4Q06679 776 aaKnown RBP6.96□□□□□ -1.3
CAF40YNL288W VIP1Q06685 1146 aaKnown RBP6.96□□□□□ -1.3
CAF40YNL288W DSE3Q08729 430 aa6.96□□□□□ -1.3
CAF40YNL288W STB3Q12427 513 aa6.96□□□□□ -1.3
CAF40YNL288W CIT1P00890 479 aa6.95□□□□□ -1.3
CAF40YNL288W LEU1P07264 779 aaKnown RBP6.95□□□□□ -1.3
CAF40YNL288W EUG1P32474 517 aa6.95□□□□□ -1.3
CAF40YNL288W RXT2P38255 430 aa6.95□□□□□ -1.3
CAF40YNL288W ATG1P53104 897 aa6.95□□□□□ -1.3
CAF40YNL288W GDE1Q02979 1223 aa6.95□□□□□ -1.3
CAF40YNL288W YDR341CQ05506 607 aaKnown RBP6.95□□□□□ -1.3
CAF40YNL288W YLR407WQ06070 228 aa6.95□□□□□ -1.3
CAF40YNL288W RPL19AP0CX82 189 aaKnown RBP6.94□□□□□ -1.3
CAF40YNL288W RPL19BP0CX83 189 aaPredicted RBP6.94□□□□□ -1.3
CAF40YNL288W CBP3P21560 335 aa6.94□□□□□ -1.3
CAF40YNL288W ASF1P32447 279 aa6.94□□□□□ -1.3
CAF40YNL288W TGL1P34163 548 aa6.94□□□□□ -1.3
CAF40YNL288W BUD6P41697 788 aa6.94□□□□□ -1.3
CAF40YNL288W EPL1P43572 832 aa6.94□□□□□ -1.3
CAF40YNL288W JJJ3P47138 172 aa6.94□□□□□ -1.3
CAF40YNL288W CTF18P49956 741 aa6.94□□□□□ -1.3
CAF40YNL288W SYT1Q06836 1226 aa6.94□□□□□ -1.3
CAF40YNL288W YDR461C-AQ2V2P7 80 aa6.94□□□□□ -1.3
CAF40YNL288W MET6P05694 767 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 5,963 RNA–protein pairs in 87 ms