Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC41.34■■■■■ 4.21
DDX4Q9NQI0 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC40.41■■■■■ 4.06
DDX4Q9NQI0 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC40.18■■■■■ 4.02
DDX4Q9NQI0 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC39.98■■■■□ 3.99
DDX4Q9NQI0 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC39.97■■■■□ 3.99
DDX4Q9NQI0 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC39.9■■■■□ 3.98
DDX4Q9NQI0 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC39.77■■■■□ 3.96
DDX4Q9NQI0 AL356512.1-201ENST00000607453 1739 ntBASIC39.73■■■■□ 3.95
DDX4Q9NQI0 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC38.78■■■■□ 3.8
DDX4Q9NQI0 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC38.72■■■■□ 3.79
DDX4Q9NQI0 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC38.68■■■■□ 3.78
DDX4Q9NQI0 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC38.56■■■■□ 3.76
DDX4Q9NQI0 HES6-203ENST00000409160 1600 ntTSL 2 BASIC38.55■■■■□ 3.76
DDX4Q9NQI0 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC38.52■■■■□ 3.76
DDX4Q9NQI0 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC38.52■■■■□ 3.76
DDX4Q9NQI0 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC38.32■■■■□ 3.73
DDX4Q9NQI0 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC38.29■■■■□ 3.72
DDX4Q9NQI0 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC38.12■■■■□ 3.69
DDX4Q9NQI0 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC38.1■■■■□ 3.69
DDX4Q9NQI0 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC38.02■■■■□ 3.68
DDX4Q9NQI0 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC38.02■■■■□ 3.68
DDX4Q9NQI0 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC37.91■■■■□ 3.66
DDX4Q9NQI0 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
DDX4Q9NQI0 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
DDX4Q9NQI0 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC37.55■■■■□ 3.6
DDX4Q9NQI0 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC37.43■■■■□ 3.58
DDX4Q9NQI0 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
DDX4Q9NQI0 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC37.41■■■■□ 3.58
DDX4Q9NQI0 INO80B-203ENST00000409917 796 ntTSL 2 BASIC37.33■■■■□ 3.57
DDX4Q9NQI0 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC37.26■■■■□ 3.55
DDX4Q9NQI0 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
DDX4Q9NQI0 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC37.16■■■■□ 3.54
DDX4Q9NQI0 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
DDX4Q9NQI0 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
DDX4Q9NQI0 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC36.86■■■■□ 3.49
DDX4Q9NQI0 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC36.85■■■■□ 3.49
DDX4Q9NQI0 AC015813.7-201ENST00000623294 581 ntBASIC36.77■■■■□ 3.48
DDX4Q9NQI0 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC36.75■■■■□ 3.47
DDX4Q9NQI0 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC36.7■■■■□ 3.47
DDX4Q9NQI0 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
DDX4Q9NQI0 AC006077.2-201ENST00000623591 457 ntBASIC36.61■■■■□ 3.45
DDX4Q9NQI0 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC36.56■■■■□ 3.44
DDX4Q9NQI0 ZNRF2P1-201ENST00000441407 443 ntBASIC36.56■■■■□ 3.44
DDX4Q9NQI0 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC36.53■■■■□ 3.44
DDX4Q9NQI0 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC36.53■■■■□ 3.44
DDX4Q9NQI0 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
DDX4Q9NQI0 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC36.21■■■■□ 3.39
DDX4Q9NQI0 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC36.2■■■■□ 3.39
DDX4Q9NQI0 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC36.17■■■■□ 3.38
DDX4Q9NQI0 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC36.16■■■■□ 3.38
DDX4Q9NQI0 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC36.09■■■■□ 3.37
DDX4Q9NQI0 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC36.06■■■■□ 3.36
DDX4Q9NQI0 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC36.02■■■■□ 3.36
DDX4Q9NQI0 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC36■■■■□ 3.35
DDX4Q9NQI0 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC35.88■■■■□ 3.33
DDX4Q9NQI0 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC35.83■■■■□ 3.33
DDX4Q9NQI0 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC35.75■■■■□ 3.31
DDX4Q9NQI0 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
DDX4Q9NQI0 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC35.72■■■■□ 3.31
DDX4Q9NQI0 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC35.7■■■■□ 3.31
DDX4Q9NQI0 AP002365.1-201ENST00000603448 772 ntBASIC35.69■■■■□ 3.3
DDX4Q9NQI0 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC35.67■■■■□ 3.3
DDX4Q9NQI0 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC35.65■■■■□ 3.3
DDX4Q9NQI0 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
DDX4Q9NQI0 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC35.64■■■■□ 3.3
DDX4Q9NQI0 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
DDX4Q9NQI0 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC35.57■■■■□ 3.28
DDX4Q9NQI0 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC35.55■■■■□ 3.28
DDX4Q9NQI0 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC35.54■■■■□ 3.28
DDX4Q9NQI0 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC35.54■■■■□ 3.28
DDX4Q9NQI0 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
DDX4Q9NQI0 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
DDX4Q9NQI0 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
DDX4Q9NQI0 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC35.45■■■■□ 3.27
DDX4Q9NQI0 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC35.39■■■■□ 3.26
DDX4Q9NQI0 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
DDX4Q9NQI0 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
DDX4Q9NQI0 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC35.37■■■■□ 3.25
DDX4Q9NQI0 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC35.36■■■■□ 3.25
DDX4Q9NQI0 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
DDX4Q9NQI0 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC35.3■■■■□ 3.24
DDX4Q9NQI0 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC35.23■■■■□ 3.23
DDX4Q9NQI0 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC35.22■■■■□ 3.23
DDX4Q9NQI0 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC35.19■■■■□ 3.22
DDX4Q9NQI0 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
DDX4Q9NQI0 DYNLL1-208ENST00000550178 581 ntBASIC35.18■■■■□ 3.22
DDX4Q9NQI0 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC35.16■■■■□ 3.22
DDX4Q9NQI0 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC35.14■■■■□ 3.22
DDX4Q9NQI0 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC35.13■■■■□ 3.21
DDX4Q9NQI0 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC35.12■■■■□ 3.21
DDX4Q9NQI0 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC35.12■■■■□ 3.21
DDX4Q9NQI0 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
DDX4Q9NQI0 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
DDX4Q9NQI0 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
DDX4Q9NQI0 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.03■■■■□ 3.2
DDX4Q9NQI0 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC35.02■■■■□ 3.2
DDX4Q9NQI0 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
DDX4Q9NQI0 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
DDX4Q9NQI0 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC34.95■■■■□ 3.19
DDX4Q9NQI0 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC34.95■■■■□ 3.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms