Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.46■■■■□ 3.27
SLC6A11P48066 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.66■■■■□ 3.14
SLC6A11P48066 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
SLC6A11P48066 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
SLC6A11P48066 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
SLC6A11P48066 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.22■■■■□ 3.07
SLC6A11P48066 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.14■■■■□ 3.06
SLC6A11P48066 AL356512.1-201ENST00000607453 1739 ntBASIC34.05■■■■□ 3.04
SLC6A11P48066 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.31■■■□□ 2.92
SLC6A11P48066 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.19■■■□□ 2.9
SLC6A11P48066 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.15■■■□□ 2.9
SLC6A11P48066 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.08■■■□□ 2.89
SLC6A11P48066 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.07■■■□□ 2.88
SLC6A11P48066 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.05■■■□□ 2.88
SLC6A11P48066 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33■■■□□ 2.87
SLC6A11P48066 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.85■■■□□ 2.85
SLC6A11P48066 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.81■■■□□ 2.84
SLC6A11P48066 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.75■■■□□ 2.83
SLC6A11P48066 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SLC6A11P48066 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.58■■■□□ 2.81
SLC6A11P48066 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
SLC6A11P48066 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
SLC6A11P48066 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.48■■■□□ 2.79
SLC6A11P48066 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
SLC6A11P48066 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
SLC6A11P48066 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.15■■■□□ 2.74
SLC6A11P48066 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SLC6A11P48066 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SLC6A11P48066 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.06■■■□□ 2.72
SLC6A11P48066 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32■■■□□ 2.71
SLC6A11P48066 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SLC6A11P48066 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.89■■■□□ 2.7
SLC6A11P48066 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SLC6A11P48066 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
SLC6A11P48066 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.62■■■□□ 2.65
SLC6A11P48066 AC015813.7-201ENST00000623294 581 ntBASIC31.58■■■□□ 2.65
SLC6A11P48066 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
SLC6A11P48066 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
SLC6A11P48066 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.49■■■□□ 2.63
SLC6A11P48066 AC006077.2-201ENST00000623591 457 ntBASIC31.45■■■□□ 2.63
SLC6A11P48066 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SLC6A11P48066 ZNRF2P1-201ENST00000441407 443 ntBASIC31.4■■■□□ 2.62
SLC6A11P48066 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.4■■■□□ 2.62
SLC6A11P48066 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
SLC6A11P48066 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
SLC6A11P48066 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SLC6A11P48066 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
SLC6A11P48066 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SLC6A11P48066 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SLC6A11P48066 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.02■■■□□ 2.56
SLC6A11P48066 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SLC6A11P48066 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.87■■■□□ 2.53
SLC6A11P48066 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.86■■■□□ 2.53
SLC6A11P48066 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.82■■■□□ 2.52
SLC6A11P48066 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SLC6A11P48066 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.7■■■□□ 2.51
SLC6A11P48066 AP002365.1-201ENST00000603448 772 ntBASIC30.64■■■□□ 2.5
SLC6A11P48066 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SLC6A11P48066 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.62■■■□□ 2.49
SLC6A11P48066 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
SLC6A11P48066 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
SLC6A11P48066 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
SLC6A11P48066 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SLC6A11P48066 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.56■■■□□ 2.48
SLC6A11P48066 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
SLC6A11P48066 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
SLC6A11P48066 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.52■■■□□ 2.48
SLC6A11P48066 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
SLC6A11P48066 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
SLC6A11P48066 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SLC6A11P48066 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SLC6A11P48066 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.49■■■□□ 2.47
SLC6A11P48066 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.46■■■□□ 2.47
SLC6A11P48066 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.45■■■□□ 2.47
SLC6A11P48066 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.42■■■□□ 2.46
SLC6A11P48066 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SLC6A11P48066 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.38■■■□□ 2.45
SLC6A11P48066 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.37■■■□□ 2.45
SLC6A11P48066 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SLC6A11P48066 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SLC6A11P48066 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.29■■■□□ 2.44
SLC6A11P48066 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
SLC6A11P48066 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
SLC6A11P48066 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.26■■■□□ 2.43
SLC6A11P48066 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
SLC6A11P48066 DYNLL1-208ENST00000550178 581 ntBASIC30.2■■■□□ 2.43
SLC6A11P48066 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
SLC6A11P48066 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.18■■■□□ 2.42
SLC6A11P48066 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
SLC6A11P48066 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.14■■■□□ 2.42
SLC6A11P48066 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.11■■■□□ 2.41
SLC6A11P48066 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
SLC6A11P48066 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SLC6A11P48066 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SLC6A11P48066 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SLC6A11P48066 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SLC6A11P48066 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.03■■■□□ 2.4
SLC6A11P48066 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SLC6A11P48066 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SLC6A11P48066 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.99■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms