Protein–RNA interactions for Protein: P05455

SSB, Lupus La protein, humanhuman

Known RBP eCLIP

Length 408 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP05455 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.95■■□□□ 1.916e-71■■■■■ 133.1
SSBP05455 SH2B1-209ENST00000563674 719 ntTSL 325.3■■□□□ 1.646e-71■■■■■ 133.1
SSBP05455 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.46e-71■■■■■ 133.1
SSBP05455 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.126e-71■■■■■ 133.1
SSBP05455 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.28■□□□□ 0.686e-71■■■■■ 133.1
SSBP05455 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.7■□□□□ 0.586e-71■■■■■ 133.1
SSBP05455 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.45■□□□□ 0.546e-71■■■■■ 133.1
SSBP05455 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.75■□□□□ 0.436e-71■■■■■ 133.1
SSBP05455 SH2B1-214ENST00000569471 791 ntTSL 316.08■□□□□ 0.166e-71■■■■■ 133.1
SSBP05455 RPPH1-201ENST00000516869 333 ntBASIC21.94■■□□□ 1.11e-323■■■■■ 131.8
SSBP05455 AL355075.4-201ENST00000554988 638 ntBASIC21.45■■□□□ 1.021e-323■■■■■ 131.8
SSBP05455 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC14.25□□□□□ -0.133e-10■■■■■ 116.5
SSBP05455 VTRNA1-3-201ENST00000365645 89 ntBASIC0.45□□□□□ -2.341e-323■■■■■ 104.6
SSBP05455 VTRNA1-1-201ENST00000363120 99 ntBASIC2.89□□□□□ -1.953e-25■■■■■ 93.3
SSBP05455 THEM7P-201ENST00000419556 672 ntBASIC7.35□□□□□ -1.234e-16■■■■■ 70.4
SSBP05455 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.613e-15■■■■■ 65.1
SSBP05455 AC124068.2-201ENST00000569473 1109 ntBASIC16.16■□□□□ 0.181e-15■■■■■ 61.6
SSBP05455 RMRP-201ENST00000602361 268 ntBASIC12.19□□□□□ -0.461e-323■■■■■ 59.7
SSBP05455 RMRP-202ENST00000363046 264 ntBASIC10.6□□□□□ -0.711e-323■■■■■ 59.7
SSBP05455 RN7SKP230-201ENST00000365642 335 ntBASIC16.67■□□□□ 0.263e-7■■■■■ 55.8
SSBP05455 SMC4-221ENST00000489573 1553 ntTSL 1 (best)24.18■■□□□ 1.469e-17■■■■■ 55.5
SSBP05455 SMC4-209ENST00000468653 1756 ntTSL 221.22■□□□□ 0.999e-17■■■■■ 55.5
SSBP05455 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.919e-17■■■■■ 55.5
SSBP05455 SMC4-211ENST00000469858 1971 ntTSL 220.29■□□□□ 0.849e-17■■■■■ 55.5
SSBP05455 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.05■□□□□ 0.489e-17■■■■■ 55.5
SSBP05455 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.039e-17■■■■■ 55.5
SSBP05455 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC11.24□□□□□ -0.619e-17■■■■■ 55.5
SSBP05455 SMC4-214ENST00000472991 582 ntTSL 510.1□□□□□ -0.799e-17■■■■■ 55.5
SSBP05455 SMC4-213ENST00000472282 667 ntTSL 310.1□□□□□ -0.799e-17■■■■■ 55.5
SSBP05455 SMC4-212ENST00000470240 724 ntTSL 38.85□□□□□ -0.999e-17■■■■■ 55.5
SSBP05455 SMC4-219ENST00000487747 637 ntTSL 57.11□□□□□ -1.279e-17■■■■■ 55.5
SSBP05455 SMC4-227ENST00000497984 563 ntTSL 56.56□□□□□ -1.369e-17■■■■■ 55.5
SSBP05455 SMC4-208ENST00000467468 566 ntTSL 46.18□□□□□ -1.429e-17■■■■■ 55.5
SSBP05455 MIR15B-201ENST00000385045 98 ntBASIC2.64□□□□□ -1.999e-17■■■■■ 55.5
SSBP05455 RNU6ATAC-201ENST00000408749 126 ntBASIC4.41□□□□□ -1.74e-56■■■■■ 52.8
SSBP05455 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.072e-14■■■■■ 48.9
SSBP05455 LINC00240-203ENST00000606878 927 ntTSL 1 (best)18.32■□□□□ 0.522e-14■■■■■ 48
SSBP05455 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.8■■□□□ 1.242e-26■■■■■ 47.4
SSBP05455 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.19■□□□□ 0.821e-13■■■■■ 47
SSBP05455 MST1R-205ENST00000440292 810 ntTSL 315.67■□□□□ 0.11e-13■■■■■ 47
SSBP05455 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.011e-13■■■■■ 47
SSBP05455 MST1R-215ENST00000621387 4449 ntTSL 1 (best) BASIC14.76□□□□□ -0.051e-13■■■■■ 47
SSBP05455 MST1R-203ENST00000411578 4683 ntTSL 514□□□□□ -0.171e-13■■■■■ 47
SSBP05455 MST1R-213ENST00000612032 1065 ntTSL 1 (best) BASIC13.59□□□□□ -0.231e-13■■■■■ 47
SSBP05455 MST1R-202ENST00000344206 4198 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.421e-13■■■■■ 47
SSBP05455 MST1R-204ENST00000434765 854 ntTSL 512.4□□□□□ -0.421e-13■■■■■ 47
SSBP05455 MST1R-206ENST00000463789 558 ntTSL 212.4□□□□□ -0.421e-13■■■■■ 47
SSBP05455 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.63□□□□□ -2.832e-68■■■■■ 41.7
SSBP05455 PIEZO1-209ENST00000490756 446 ntTSL 322.6■■□□□ 1.217e-11■■■■■ 41.3
SSBP05455 LIMD1-AS1-202ENST00000429798 955 ntTSL 1 (best)11.45□□□□□ -0.585e-15■■■■■ 36.5
SSBP05455 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC14.25□□□□□ -0.133e-7■■■■■ 35.9
SSBP05455 ARFGAP1-214ENST00000520485 1548 ntTSL 225.68■■□□□ 1.71e-10■■■■■ 35.6
SSBP05455 ARFGAP1-211ENST00000519531 1490 ntTSL 320.07■□□□□ 0.81e-10■■■■■ 35.6
SSBP05455 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.621e-10■■■■■ 35.6
SSBP05455 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.83■□□□□ 0.611e-10■■■■■ 35.6
SSBP05455 ARFGAP1-215ENST00000522403 995 ntTSL 517.92■□□□□ 0.461e-10■■■■■ 35.6
SSBP05455 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.91■□□□□ 0.461e-10■■■■■ 35.6
SSBP05455 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.291e-10■■■■■ 35.6
SSBP05455 ARFGAP1-221ENST00000549047 1040 ntTSL 516.75■□□□□ 0.271e-10■■■■■ 35.6
SSBP05455 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.171e-10■■■■■ 35.6
SSBP05455 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC15.74■□□□□ 0.111e-10■■■■■ 35.6
SSBP05455 ARFGAP1-218ENST00000523460 572 ntTSL 415.71■□□□□ 0.111e-10■■■■■ 35.6
SSBP05455 ARFGAP1-206ENST00000518601 905 ntTSL 514.56□□□□□ -0.081e-10■■■■■ 35.6
SSBP05455 PPAN-204ENST00000444703 757 ntTSL 329.03■■■□□ 2.246e-7■■■■■ 35.5
SSBP05455 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.64■■■□□ 2.016e-7■■■■■ 35.5
SSBP05455 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.586e-7■■■■■ 35.5
SSBP05455 PPAN-207ENST00000468881 627 ntTSL 220.1■□□□□ 0.816e-7■■■■■ 35.5
SSBP05455 PPAN-206ENST00000466025 523 ntTSL 220.08■□□□□ 0.816e-7■■■■■ 35.5
SSBP05455 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.86e-7■■■■■ 35.5
SSBP05455 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.47■□□□□ 0.556e-7■■■■■ 35.5
SSBP05455 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.343e-8■■■■■ 35.4
SSBP05455 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.243e-8■■■■■ 35.4
SSBP05455 GRTP1-204ENST00000476439 877 ntTSL 221.21■□□□□ 0.993e-8■■■■■ 35.4
SSBP05455 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.21■□□□□ 0.673e-8■■■■■ 35.4
SSBP05455 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.192e-8■■■■■ 33.2
SSBP05455 PTPN23-205ENST00000495653 676 ntTSL 215.49■□□□□ 0.072e-8■■■■■ 33.2
SSBP05455 PTPN23-206ENST00000602307 5119 ntTSL 214.23□□□□□ -0.132e-8■■■■■ 33.2
SSBP05455 VTRNA1-2-201ENST00000365241 89 ntBASIC9.62□□□□□ -0.871e-323■■■■■ 32.9
SSBP05455 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.88□□□□□ -2.112e-7■■■■■ 31.9
SSBP05455 DDX39B-203ENST00000417023 561 ntTSL 514.24□□□□□ -0.135e-9■■■■■ 31.2
SSBP05455 DDX39B-210ENST00000431908 914 ntTSL 513.22□□□□□ -0.295e-9■■■■■ 31.2
SSBP05455 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.325e-9■■■■■ 31.2
SSBP05455 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.415e-9■■■■■ 31.2
SSBP05455 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC12.38□□□□□ -0.435e-9■■■■■ 31.2
SSBP05455 DDX39B-220ENST00000482195 1232 ntTSL 211.6□□□□□ -0.555e-9■■■■■ 31.2
SSBP05455 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.655e-9■■■■■ 31.2
SSBP05455 DDX39B-215ENST00000462256 4027 ntTSL 210.67□□□□□ -0.75e-9■■■■■ 31.2
SSBP05455 DDX39B-221ENST00000484566 857 ntTSL 59.6□□□□□ -0.875e-9■■■■■ 31.2
SSBP05455 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.626e-8■■■■■ 31.2
SSBP05455 HGS-212ENST00000575058 632 ntTSL 318.19■□□□□ 0.56e-8■■■■■ 31.2
SSBP05455 HGS-204ENST00000571237 878 ntTSL 318■□□□□ 0.476e-8■■■■■ 31.2
SSBP05455 AGBL5-207ENST00000453161 673 ntTSL 314.31□□□□□ -0.121e-17■■■■■ 31.2
SSBP05455 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.411e-8■■■■■ 30.7
SSBP05455 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.872e-11■■■■■ 29.9
SSBP05455 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.42■□□□□ 0.222e-11■■■■■ 29.9
SSBP05455 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.042e-11■■■■■ 29.9
SSBP05455 AC008687.1-202ENST00000604577 406 ntTSL 1 (best)15.31■□□□□ 0.041e-11■■■■■ 29.8
SSBP05455 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.031e-11■■■■■ 29.8
SSBP05455 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.74e-9■■■■■ 29.1
SSBP05455 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.21■□□□□ 0.357e-20■■■■■ 28.2
Retrieved 100 of 672 protein–RNA pairs in 9.6 ms