RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 AEBP2Q6ZN18 517 aaPredicted RBP30.18■■■□□ 2.42
SMC4-219ENST00000487747 CHIC1Q5VXU3 224 aa28.84■■■□□ 2.21
SMC4-219ENST00000487747 SENP3Q9H4L4 574 aaPredicted RBP25.53■■□□□ 1.68
SMC4-219ENST00000487747 PHF23Q9BUL5 403 aaPredicted RBP25.39■■□□□ 1.66
SMC4-219ENST00000487747 FOXD1Q16676 465 aa23.88■■□□□ 1.41
SMC4-219ENST00000487747 PLPPR3Q6T4P5 718 aa23.12■■□□□ 1.29
SMC4-219ENST00000487747 PPP6R1Q9UPN7 881 aa22.62■■□□□ 1.21
SMC4-219ENST00000487747 POTEDQ86YR6 584 aa22.6■■□□□ 1.21
SMC4-219ENST00000487747 ADRA2BP18089 450 aa22.53■■□□□ 1.2
SMC4-219ENST00000487747 PIAS4Q8N2W9 510 aaPredicted RBP22.33■■□□□ 1.17
SMC4-219ENST00000487747 MSH5O43196 834 aa22.09■■□□□ 1.13
SMC4-219ENST00000487747 MAPK8IP2Q13387 824 aaPredicted RBP20.65■□□□□ 0.9
SMC4-219ENST00000487747 SCAF1Q9H7N4 1312 aaKnown RBP20.43■□□□□ 0.86
SMC4-219ENST00000487747 PPP4R3CPQ6ZMV5 832 aa20.36■□□□□ 0.85
SMC4-219ENST00000487747 DMRT2Q9Y5R5 561 aa20.33■□□□□ 0.85
SMC4-219ENST00000487747 CNKSR2Q8WXI2 1034 aa19.86■□□□□ 0.77
SMC4-219ENST00000487747 HOXD11P31277 338 aaPredicted RBP19.7■□□□□ 0.74
SMC4-219ENST00000487747 RNF216Q9NWF9 866 aaPredicted RBP19.61■□□□□ 0.73
SMC4-219ENST00000487747 NCBP3Q53F19 620 aaKnown RBP19.56■□□□□ 0.72
SMC4-219ENST00000487747 DCAF8L1A6NGE4 600 aa19.5■□□□□ 0.71
SMC4-219ENST00000487747 NPM3O75607 178 aaKnown RBP19.4■□□□□ 0.7
SMC4-219ENST00000487747 KCNA4P22459 653 aa19.33■□□□□ 0.68
SMC4-219ENST00000487747 CACNB1Q02641 598 aaPredicted RBP19.31■□□□□ 0.68
SMC4-219ENST00000487747 RNF39Q9H2S5 420 aa18.96■□□□□ 0.63
SMC4-219ENST00000487747 DNAJC5BQ9UF47 199 aa18.86■□□□□ 0.61
SMC4-219ENST00000487747 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.75■□□□□ 0.592e-7■■■■■ 35.7
SMC4-219ENST00000487747 C1QBPQ07021 282 aaKnown RBP18.63■□□□□ 0.57
SMC4-219ENST00000487747 SLC4A2P04920 1241 aa18.5■□□□□ 0.55
SMC4-219ENST00000487747 U3KPZ7 1027 aaPredicted RBP18.46■□□□□ 0.55
SMC4-219ENST00000487747 SLC4A1APQ9BWU0 796 aaKnown RBP18.24■□□□□ 0.51
SMC4-219ENST00000487747 SPINK5Q9NQ38 1064 aaPredicted RBP18.14■□□□□ 0.49
SMC4-219ENST00000487747 CAPN15O75808 1086 aa18.01■□□□□ 0.47
SMC4-219ENST00000487747 DSG3P32926 999 aa17.87■□□□□ 0.45
SMC4-219ENST00000487747 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.86■□□□□ 0.45
SMC4-219ENST00000487747 HNRNPUL2Q1KMD3 747 aaKnown RBP17.86■□□□□ 0.45
SMC4-219ENST00000487747 MYCNP04198 464 aaPredicted RBP17.85■□□□□ 0.45
SMC4-219ENST00000487747 FOXD4L1Q9NU39 408 aa17.85■□□□□ 0.45
SMC4-219ENST00000487747 ZBTB22O15209 634 aa17.83■□□□□ 0.44
SMC4-219ENST00000487747 TRHP20396 242 aaPredicted RBP17.82■□□□□ 0.44
SMC4-219ENST00000487747 SAMD1Q6SPF0 538 aaPredicted RBP17.82■□□□□ 0.44
SMC4-219ENST00000487747 APLP2Q06481 763 aa17.76■□□□□ 0.43
SMC4-219ENST00000487747 ZNF219Q9P2Y4 722 aaPredicted RBP17.7■□□□□ 0.42
SMC4-219ENST00000487747 ABCB7O75027 752 aa17.69■□□□□ 0.42
SMC4-219ENST00000487747 ATF5Q9Y2D1 282 aaPredicted RBP17.59■□□□□ 0.41
SMC4-219ENST00000487747 POTEHQ6S545 545 aa17.58■□□□□ 0.4
SMC4-219ENST00000487747 POLA2Q14181 598 aa17.42■□□□□ 0.38
SMC4-219ENST00000487747 CSRNP3Q8WYN3 585 aa17.23■□□□□ 0.35
SMC4-219ENST00000487747 ATXN8OSP0DMR3 200 aa17.22■□□□□ 0.35
SMC4-219ENST00000487747 EHMT2Q96KQ7 1210 aa17.16■□□□□ 0.34
SMC4-219ENST00000487747 ZBTB12Q9Y330 459 aaPredicted RBP16.93■□□□□ 0.3
SMC4-219ENST00000487747 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
SMC4-219ENST00000487747 OSCARQ8IYS5 282 aa16.86■□□□□ 0.29
SMC4-219ENST00000487747 MKRN4PQ13434 485 aaPredicted RBP16.76■□□□□ 0.27
SMC4-219ENST00000487747 FBLN2P98095 1184 aa16.69■□□□□ 0.26
SMC4-219ENST00000487747 AKT1S1Q96B36 256 aa16.64■□□□□ 0.25
SMC4-219ENST00000487747 REM2Q8IYK8 340 aaPredicted RBP16.55■□□□□ 0.24
SMC4-219ENST00000487747 CHRDL2Q6WN34 429 aa16.53■□□□□ 0.24
SMC4-219ENST00000487747 SPDYE2BA6NHP3 402 aa16.5■□□□□ 0.23
SMC4-219ENST00000487747 SPDYE6P0CI01 402 aa16.5■□□□□ 0.23
SMC4-219ENST00000487747 SPDYE2Q495Y8 402 aa16.5■□□□□ 0.23
SMC4-219ENST00000487747 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
SMC4-219ENST00000487747 PITPNM1O00562 1244 aa16.38■□□□□ 0.21
SMC4-219ENST00000487747 SSUH2Q9Y2M2 353 aa16.36■□□□□ 0.21
SMC4-219ENST00000487747 PIP4P2Q8N4L2 257 aa16.22■□□□□ 0.19
SMC4-219ENST00000487747 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
SMC4-219ENST00000487747 SP7Q8TDD2 431 aaPredicted RBP16.19■□□□□ 0.18
SMC4-219ENST00000487747 CLEC11AQ9Y240 323 aa16.16■□□□□ 0.18
SMC4-219ENST00000487747 FXR2P51116 673 aaKnown RBP eCLIP16.15■□□□□ 0.188e-21■■■■■ 76.4
SMC4-219ENST00000487747 SPDYE1Q8NFV5 336 aaPredicted RBP16.13■□□□□ 0.17
SMC4-219ENST00000487747 SPDYE4A6NLX3 237 aa16.04■□□□□ 0.16
SMC4-219ENST00000487747 PRKAR2AP13861 404 aaKnown RBP15.94■□□□□ 0.14
SMC4-219ENST00000487747 PRR29P0C7W0 189 aa15.9■□□□□ 0.14
SMC4-219ENST00000487747 CHADLQ6NUI6 762 aa15.89■□□□□ 0.13
SMC4-219ENST00000487747 HAX1O00165 279 aa15.83■□□□□ 0.12
SMC4-219ENST00000487747 EVX2Q03828 476 aa15.78■□□□□ 0.12
SMC4-219ENST00000487747 PROM2Q8N271 834 aa15.71■□□□□ 0.11
SMC4-219ENST00000487747 STAG3Q9UJ98 1225 aa15.69■□□□□ 0.1
SMC4-219ENST00000487747 CREBZFQ9NS37 354 aa15.64■□□□□ 0.09
SMC4-219ENST00000487747 C19orf67A6NJJ6 358 aa15.62■□□□□ 0.09
SMC4-219ENST00000487747 FARP1Q9Y4F1 1045 aaPredicted RBP15.62■□□□□ 0.09
SMC4-219ENST00000487747 FKBP8Q14318 412 aa15.57■□□□□ 0.08
SMC4-219ENST00000487747 CD44P16070 742 aaKnown RBP15.44■□□□□ 0.06
SMC4-219ENST00000487747 MNX1P50219 401 aaPredicted RBP15.43■□□□□ 0.06
SMC4-219ENST00000487747 GABBR2O75899 941 aa15.35■□□□□ 0.05
SMC4-219ENST00000487747 ZRANB1Q9UGI0 708 aa15.27■□□□□ 0.04
SMC4-219ENST00000487747 MIER1Q8N108 512 aa15.26■□□□□ 0.03
SMC4-219ENST00000487747 NPM1P06748 294 aaKnown RBP eCLIP15.24■□□□□ 0.03
SMC4-219ENST00000487747 ZNF579Q8NAF0 562 aaKnown RBP15.19■□□□□ 0.02
SMC4-219ENST00000487747 LHX8Q68G74 356 aa15.17■□□□□ 0.02
SMC4-219ENST00000487747 PLCD3Q8N3E9 789 aa15.16■□□□□ 0.02
SMC4-219ENST00000487747 PHF12Q96QT6 1004 aa15.14■□□□□ 0.01
SMC4-219ENST00000487747 PAK3O75914 559 aaPredicted RBP15.11■□□□□ 0.01
SMC4-219ENST00000487747 PLEKHG5O94827 1062 aa15.1■□□□□ 0.01
SMC4-219ENST00000487747 TSPYL2Q9H2G4 693 aaPredicted RBP15.09■□□□□ 0.01
SMC4-219ENST00000487747 POTEIP0CG38 1075 aa15.08■□□□□ 0
SMC4-219ENST00000487747 GALR2O43603 387 aaPredicted RBP15.07■□□□□ 0
SMC4-219ENST00000487747 RASEFQ8IZ41 740 aa15.06■□□□□ 0
SMC4-219ENST00000487747 FBXO3Q9UK99 471 aa15.05■□□□□ -0
SMC4-219ENST00000487747 CLCN6P51797 869 aa15.02■□□□□ -0
SMC4-219ENST00000487747 CCDC61Q9Y6R9 512 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms