RNA–Protein interactions for RNA: ENST00000606878.1

LINC00240-203, long intergenic non-protein coding RNA 240, humanhuman

TSL 1 (best)

Gene LINC00240, Length 927 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00240-203ENST00000606878 NISCHQ9Y2I1 1504 aa40.11■■■■■ 4.01
LINC00240-203ENST00000606878 CCDC180Q9P1Z9 1646 aa35.56■■■■□ 3.28
LINC00240-203ENST00000606878 ABCC9O60706 1549 aa35.1■■■■□ 3.21
LINC00240-203ENST00000606878 DCAF8L2P0C7V8 631 aa33.84■■■■□ 3.01
LINC00240-203ENST00000606878 RB1CC1Q8TDY2 1594 aa33.64■■■□□ 2.98
LINC00240-203ENST00000606878 NACADO15069 1562 aa33.6■■■□□ 2.97
LINC00240-203ENST00000606878 MYO15BQ96JP2 1530 aa33.34■■■□□ 2.93
LINC00240-203ENST00000606878 ZCCHC6Q5VYS8 1495 aaKnown RBP33.32■■■□□ 2.92
LINC00240-203ENST00000606878 DCAF1Q9Y4B6 1507 aa33.14■■■□□ 2.9
LINC00240-203ENST00000606878 PABPN1Q86U42 306 aaKnown RBP eCLIP32.91■■■□□ 2.86
LINC00240-203ENST00000606878 UNC13AQ9UPW8 1703 aa32.69■■■□□ 2.82
LINC00240-203ENST00000606878 BICRAQ9NZM4 1560 aa32.58■■■□□ 2.81
LINC00240-203ENST00000606878 SCRIBQ14160 1630 aa32.5■■■□□ 2.79
LINC00240-203ENST00000606878 DNAJC5BQ9UF47 199 aa32.43■■■□□ 2.78
LINC00240-203ENST00000606878 SHROOM4Q9ULL8 1493 aa32.26■■■□□ 2.75
LINC00240-203ENST00000606878 EIF4G1Q04637 1599 aaKnown RBP31.76■■■□□ 2.67
LINC00240-203ENST00000606878 CC2D2AQ9P2K1 1620 aa31.66■■■□□ 2.66
LINC00240-203ENST00000606878 CECR2Q9BXF3 1484 aa31.56■■■□□ 2.64
LINC00240-203ENST00000606878 SMARCA4P51532 1647 aa31.07■■■□□ 2.56
LINC00240-203ENST00000606878 BAZ1AQ9NRL2 1556 aaPredicted RBP31.07■■■□□ 2.56
LINC00240-203ENST00000606878 NCAPD3P42695 1498 aa31.07■■■□□ 2.56
LINC00240-203ENST00000606878 ATAD2BQ9ULI0 1458 aa31.03■■■□□ 2.56
LINC00240-203ENST00000606878 SMARCA2P51531 1590 aa30.96■■■□□ 2.55
LINC00240-203ENST00000606878 MROH2BQ7Z745 1585 aa30.89■■■□□ 2.54
LINC00240-203ENST00000606878 HMGXB3Q12766 1538 aa30.78■■■□□ 2.52
LINC00240-203ENST00000606878 PEG3Q9GZU2 1588 aa30.77■■■□□ 2.52
LINC00240-203ENST00000606878 BAZ1BQ9UIG0 1483 aaKnown RBP30.76■■■□□ 2.52
LINC00240-203ENST00000606878 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
LINC00240-203ENST00000606878 WIZO95785 1651 aa30.49■■■□□ 2.47
LINC00240-203ENST00000606878 NESP48681 1621 aa30.3■■■□□ 2.44
LINC00240-203ENST00000606878 ERCC6Q03468 1493 aa30.29■■■□□ 2.44
LINC00240-203ENST00000606878 CADPSQ9ULU8 1353 aa30.2■■■□□ 2.43
LINC00240-203ENST00000606878 TOP2AP11388 1531 aaKnown RBP30.18■■■□□ 2.42
LINC00240-203ENST00000606878 LAMC3Q9Y6N6 1575 aa30.17■■■□□ 2.42
LINC00240-203ENST00000606878 PDS5BQ9NTI5 1447 aa30.11■■■□□ 2.41
LINC00240-203ENST00000606878 CUX2O14529 1486 aa29.96■■■□□ 2.39
LINC00240-203ENST00000606878 CCDC88BA6NC98 1476 aa29.93■■■□□ 2.38
LINC00240-203ENST00000606878 CFTRP13569 1480 aa29.93■■■□□ 2.38
LINC00240-203ENST00000606878 SUPT5HO00267 1087 aaKnown RBP29.86■■■□□ 2.37
LINC00240-203ENST00000606878 KIF21AQ7Z4S6 1674 aa29.8■■■□□ 2.36
LINC00240-203ENST00000606878 FANCD2Q9BXW9 1451 aa29.79■■■□□ 2.36
LINC00240-203ENST00000606878 THOC2Q8NI27 1593 aaKnown RBP29.74■■■□□ 2.35
LINC00240-203ENST00000606878 CEP164Q9UPV0 1460 aa29.74■■■□□ 2.35
LINC00240-203ENST00000606878 MRC2Q9UBG0 1479 aa29.72■■■□□ 2.35
LINC00240-203ENST00000606878 WDR62O43379 1518 aa29.56■■■□□ 2.32
LINC00240-203ENST00000606878 URB2Q14146 1524 aaKnown RBP29.45■■■□□ 2.3
LINC00240-203ENST00000606878 PRDM2Q13029 1718 aa29.44■■■□□ 2.3
LINC00240-203ENST00000606878 DNAJC5Q9H3Z4 198 aa29.36■■■□□ 2.29
LINC00240-203ENST00000606878 ABCC8Q09428 1581 aa29.33■■■□□ 2.29
LINC00240-203ENST00000606878 TOPBP1Q92547 1522 aa29.26■■■□□ 2.27
LINC00240-203ENST00000606878 DNMBPQ6XZF7 1577 aa29.18■■■□□ 2.26
LINC00240-203ENST00000606878 IFT140Q96RY7 1462 aa29.16■■■□□ 2.26
LINC00240-203ENST00000606878 POLA1P09884 1462 aaPredicted RBP29.01■■■□□ 2.23
LINC00240-203ENST00000606878 ZNF608Q9ULD9 1512 aaPredicted RBP29■■■□□ 2.23
LINC00240-203ENST00000606878 SOGA1O94964 1423 aa29■■■□□ 2.23
LINC00240-203ENST00000606878 CUX1P39880 1505 aa28.97■■■□□ 2.23
LINC00240-203ENST00000606878 FGD5Q6ZNL6 1462 aa28.92■■■□□ 2.22
LINC00240-203ENST00000606878 RAD54L2Q9Y4B4 1467 aa28.92■■■□□ 2.22
LINC00240-203ENST00000606878 OSCARQ8IYS5 282 aa28.91■■■□□ 2.22
LINC00240-203ENST00000606878 AQRO60306 1485 aaKnown RBP eCLIP28.89■■■□□ 2.22
LINC00240-203ENST00000606878 TARBP1Q13395 1621 aaKnown RBP28.88■■■□□ 2.21
LINC00240-203ENST00000606878 TDRD9Q8NDG6 1382 aaKnown RBP28.86■■■□□ 2.21
LINC00240-203ENST00000606878 WRNQ14191 1432 aaPredicted RBP eCLIP28.83■■■□□ 2.213e-17■□□□□ 8
LINC00240-203ENST00000606878 EIF4G3O43432 1585 aaKnown RBP28.76■■■□□ 2.19
LINC00240-203ENST00000606878 FBLN2P98095 1184 aa28.7■■■□□ 2.18
LINC00240-203ENST00000606878 TOP2BQ02880 1626 aa28.66■■■□□ 2.18
LINC00240-203ENST00000606878 WDR97A6NE52 1622 aa28.65■■■□□ 2.18
LINC00240-203ENST00000606878 ABCA10Q8WWZ4 1543 aa28.64■■■□□ 2.18
LINC00240-203ENST00000606878 SYNJ1O43426 1573 aa28.63■■■□□ 2.17
LINC00240-203ENST00000606878 GRIN2BQ13224 1484 aa28.61■■■□□ 2.17
LINC00240-203ENST00000606878 BIVM-ERCC5R4GMW8 1640 aa28.61■■■□□ 2.17
LINC00240-203ENST00000606878 GAPVD1Q14C86 1478 aa28.6■■■□□ 2.17
LINC00240-203ENST00000606878 CHMP7Q8WUX9 453 aaPredicted RBP28.59■■■□□ 2.17
LINC00240-203ENST00000606878 SNAPC4Q5SXM2 1469 aa28.54■■■□□ 2.16
LINC00240-203ENST00000606878 MAGI1Q96QZ7 1491 aaPredicted RBP28.52■■■□□ 2.16
LINC00240-203ENST00000606878 ABCA5Q8WWZ7 1642 aa28.43■■■□□ 2.14
LINC00240-203ENST00000606878 SYNJ2O15056 1496 aa28.42■■■□□ 2.14
LINC00240-203ENST00000606878 CHD1O14646 1710 aa28.4■■■□□ 2.14
LINC00240-203ENST00000606878 TRIM41Q8WV44 630 aa28.35■■■□□ 2.13
LINC00240-203ENST00000606878 PBRM1Q86U86 1689 aa28.35■■■□□ 2.13
LINC00240-203ENST00000606878 ERICH3Q5RHP9 1530 aa28.28■■■□□ 2.12
LINC00240-203ENST00000606878 FHAD1B1AJZ9 1412 aa28.28■■■□□ 2.12
LINC00240-203ENST00000606878 KIF27Q86VH2 1401 aa28.27■■■□□ 2.12
LINC00240-203ENST00000606878 ARHGEF11O15085 1522 aa28.22■■■□□ 2.11
LINC00240-203ENST00000606878 IGF1RP08069 1367 aa28.21■■■□□ 2.11
LINC00240-203ENST00000606878 GRIN2AQ12879 1464 aa28.21■■■□□ 2.11
LINC00240-203ENST00000606878 ADAMTS12P58397 1594 aa28.18■■■□□ 2.1
LINC00240-203ENST00000606878 RIMBP3CA6NJZ7 1639 aa28.18■■■□□ 2.1
LINC00240-203ENST00000606878 RIMBP3BA6NNM3 1639 aa28.18■■■□□ 2.1
LINC00240-203ENST00000606878 RIMBP3Q9UFD9 1639 aa28.18■■■□□ 2.1
LINC00240-203ENST00000606878 CYB5RLQ6IPT4 315 aa28.17■■■□□ 2.1
LINC00240-203ENST00000606878 CLASP1Q7Z460 1538 aa28.15■■■□□ 2.1
LINC00240-203ENST00000606878 NUP160Q12769 1436 aa28.09■■■□□ 2.09
LINC00240-203ENST00000606878 CARMIL1Q5VZK9 1371 aa28.03■■■□□ 2.08
LINC00240-203ENST00000606878 CEP170Q5SW79 1584 aa28■■■□□ 2.07
LINC00240-203ENST00000606878 JPH4Q96JJ6 628 aa27.98■■■□□ 2.07
LINC00240-203ENST00000606878 ARAP1Q96P48 1450 aa27.97■■■□□ 2.07
LINC00240-203ENST00000606878 CUL7Q14999 1698 aa27.93■■■□□ 2.06
LINC00240-203ENST00000606878 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
LINC00240-203ENST00000606878 KIAA0586Q9BVV6 1533 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms