RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 NISCHQ9Y2I1 1504 aa49.85■■■■■ 5.57
SMC4-221ENST00000489573 CCDC180Q9P1Z9 1646 aa43.67■■■■■ 4.58
SMC4-221ENST00000489573 ZCCHC6Q5VYS8 1495 aaKnown RBP41.84■■■■■ 4.29
SMC4-221ENST00000489573 ABCC9O60706 1549 aa41.52■■■■■ 4.24
SMC4-221ENST00000489573 DCAF1Q9Y4B6 1507 aa41.27■■■■■ 4.2
SMC4-221ENST00000489573 DCAF8L2P0C7V8 631 aa41.16■■■■■ 4.18
SMC4-221ENST00000489573 MYO15BQ96JP2 1530 aa40.92■■■■■ 4.14
SMC4-221ENST00000489573 NACADO15069 1562 aa40.75■■■■■ 4.11
SMC4-221ENST00000489573 RB1CC1Q8TDY2 1594 aa40.47■■■■■ 4.07
SMC4-221ENST00000489573 SHROOM4Q9ULL8 1493 aa40.36■■■■■ 4.05
SMC4-221ENST00000489573 SCRIBQ14160 1630 aa40.05■■■■■ 4
SMC4-221ENST00000489573 UNC13AQ9UPW8 1703 aa39.57■■■■□ 3.93
SMC4-221ENST00000489573 BICRAQ9NZM4 1560 aa39.21■■■■□ 3.87
SMC4-221ENST00000489573 PABPN1Q86U42 306 aaKnown RBP eCLIP39.04■■■■□ 3.84
SMC4-221ENST00000489573 CECR2Q9BXF3 1484 aa38.72■■■■□ 3.79
SMC4-221ENST00000489573 SUPT5HO00267 1087 aaKnown RBP38.65■■■■□ 3.78
SMC4-221ENST00000489573 BAZ1AQ9NRL2 1556 aaPredicted RBP38.55■■■■□ 3.76
SMC4-221ENST00000489573 RSF1Q96T23 1441 aaPredicted RBP38.53■■■■□ 3.76
SMC4-221ENST00000489573 MROH2BQ7Z745 1585 aa38.48■■■■□ 3.75
SMC4-221ENST00000489573 SMARCA4P51532 1647 aa38.4■■■■□ 3.74
SMC4-221ENST00000489573 DNAJC5BQ9UF47 199 aa38.31■■■■□ 3.72
SMC4-221ENST00000489573 WIZO95785 1651 aa38.14■■■■□ 3.7
SMC4-221ENST00000489573 EIF4G1Q04637 1599 aaKnown RBP38.07■■■■□ 3.69
SMC4-221ENST00000489573 PEG3Q9GZU2 1588 aa37.97■■■■□ 3.67
SMC4-221ENST00000489573 ATAD2BQ9ULI0 1458 aa37.85■■■■□ 3.65
SMC4-221ENST00000489573 SMARCA2P51531 1590 aa37.85■■■■□ 3.65
SMC4-221ENST00000489573 TOP2AP11388 1531 aaKnown RBP37.79■■■■□ 3.64
SMC4-221ENST00000489573 BAZ1BQ9UIG0 1483 aaKnown RBP37.63■■■■□ 3.61
SMC4-221ENST00000489573 NCAPD3P42695 1498 aa37.58■■■■□ 3.61
SMC4-221ENST00000489573 CC2D2AQ9P2K1 1620 aa37.58■■■■□ 3.61
SMC4-221ENST00000489573 HMGXB3Q12766 1538 aa37.54■■■■□ 3.6
SMC4-221ENST00000489573 CCDC88BA6NC98 1476 aa37.35■■■■□ 3.57
SMC4-221ENST00000489573 CHIC1Q5VXU3 224 aa36.85■■■■□ 3.49
SMC4-221ENST00000489573 CFTRP13569 1480 aa36.66■■■■□ 3.46
SMC4-221ENST00000489573 CADPSQ9ULU8 1353 aa36.59■■■■□ 3.45
SMC4-221ENST00000489573 PRDM2Q13029 1718 aa36.46■■■■□ 3.43
SMC4-221ENST00000489573 ABCC8Q09428 1581 aa36.44■■■■□ 3.42
SMC4-221ENST00000489573 TRIM41Q8WV44 630 aa36.4■■■■□ 3.42
SMC4-221ENST00000489573 LAMC3Q9Y6N6 1575 aa36.38■■■■□ 3.41
SMC4-221ENST00000489573 NESP48681 1621 aa36.33■■■■□ 3.41
SMC4-221ENST00000489573 WRNQ14191 1432 aaPredicted RBP eCLIP36.3■■■■□ 3.4
SMC4-221ENST00000489573 FANCD2Q9BXW9 1451 aa36.19■■■■□ 3.38
SMC4-221ENST00000489573 SYNJ1O43426 1573 aa36.14■■■■□ 3.38
SMC4-221ENST00000489573 PDS5BQ9NTI5 1447 aa36.09■■■■□ 3.37
SMC4-221ENST00000489573 TOP2BQ02880 1626 aa36.05■■■■□ 3.36
SMC4-221ENST00000489573 BIVM-ERCC5R4GMW8 1640 aa36.02■■■■□ 3.36
SMC4-221ENST00000489573 CUX1P39880 1505 aa36.02■■■■□ 3.36
SMC4-221ENST00000489573 CEP164Q9UPV0 1460 aa36.01■■■■□ 3.36
SMC4-221ENST00000489573 KIF21AQ7Z4S6 1674 aa35.91■■■■□ 3.34
SMC4-221ENST00000489573 DNMBPQ6XZF7 1577 aa35.83■■■■□ 3.33
SMC4-221ENST00000489573 TOPBP1Q92547 1522 aa35.76■■■■□ 3.32
SMC4-221ENST00000489573 URB2Q14146 1524 aaKnown RBP35.75■■■■□ 3.31
SMC4-221ENST00000489573 SOGA1O94964 1423 aa35.69■■■■□ 3.3
SMC4-221ENST00000489573 FGD5Q6ZNL6 1462 aa35.68■■■■□ 3.3
SMC4-221ENST00000489573 FAM9AQ8IZU1 332 aaPredicted RBP35.68■■■■□ 3.3
SMC4-221ENST00000489573 MRC2Q9UBG0 1479 aa35.67■■■■□ 3.3
SMC4-221ENST00000489573 ERCC6Q03468 1493 aa35.66■■■■□ 3.3
SMC4-221ENST00000489573 EEA1Q15075 1411 aa35.64■■■■□ 3.3
SMC4-221ENST00000489573 RUSC2Q8N2Y8 1516 aa35.56■■■■□ 3.28
SMC4-221ENST00000489573 POLA1P09884 1462 aaPredicted RBP35.55■■■■□ 3.28
SMC4-221ENST00000489573 WDR62O43379 1518 aa35.49■■■■□ 3.27
SMC4-221ENST00000489573 THOC2Q8NI27 1593 aaKnown RBP35.45■■■■□ 3.26
SMC4-221ENST00000489573 KIF27Q86VH2 1401 aa35.42■■■■□ 3.26
SMC4-221ENST00000489573 RAD54L2Q9Y4B4 1467 aa35.41■■■■□ 3.26
SMC4-221ENST00000489573 CSRNP3Q8WYN3 585 aa35.4■■■■□ 3.26
SMC4-221ENST00000489573 CUX2O14529 1486 aa35.39■■■■□ 3.26
SMC4-221ENST00000489573 ABCA10Q8WWZ4 1543 aa35.38■■■■□ 3.25
SMC4-221ENST00000489573 LOC105371045A0A1W2PR82 267 aa35.37■■■■□ 3.25
SMC4-221ENST00000489573 WDR97A6NE52 1622 aa35.29■■■■□ 3.24
SMC4-221ENST00000489573 TARBP1Q13395 1621 aaKnown RBP35.25■■■■□ 3.23
SMC4-221ENST00000489573 KIF21BO75037 1637 aa35.18■■■■□ 3.22
SMC4-221ENST00000489573 IFT140Q96RY7 1462 aa35.18■■■■□ 3.22
SMC4-221ENST00000489573 EHMT2Q96KQ7 1210 aa35.14■■■■□ 3.22
SMC4-221ENST00000489573 ABCA5Q8WWZ7 1642 aa35.12■■■■□ 3.21
SMC4-221ENST00000489573 GOLGA3Q08378 1498 aa35.11■■■■□ 3.21
SMC4-221ENST00000489573 IGF1RP08069 1367 aa35.1■■■■□ 3.21
SMC4-221ENST00000489573 PRXQ9BXM0 1461 aa35.09■■■■□ 3.21
SMC4-221ENST00000489573 TDRD9Q8NDG6 1382 aaKnown RBP35.09■■■■□ 3.21
SMC4-221ENST00000489573 GAPVD1Q14C86 1478 aa35.04■■■■□ 3.2
SMC4-221ENST00000489573 ERICH3Q5RHP9 1530 aa35.02■■■■□ 3.2
SMC4-221ENST00000489573 RAPGEF2Q9Y4G8 1499 aa34.99■■■■□ 3.19
SMC4-221ENST00000489573 ZNF608Q9ULD9 1512 aaPredicted RBP34.94■■■■□ 3.18
SMC4-221ENST00000489573 CARMIL1Q5VZK9 1371 aa34.93■■■■□ 3.18
SMC4-221ENST00000489573 TNIKQ9UKE5 1360 aa34.92■■■■□ 3.18
SMC4-221ENST00000489573 AQRO60306 1485 aaKnown RBP eCLIP34.92■■■■□ 3.181e-8■■■■■ 109.5
SMC4-221ENST00000489573 CUL7Q14999 1698 aa34.91■■■■□ 3.18
SMC4-221ENST00000489573 UBTFP17480 764 aaKnown RBP34.9■■■■□ 3.18
SMC4-221ENST00000489573 PBRM1Q86U86 1689 aa34.88■■■■□ 3.17
SMC4-221ENST00000489573 EIF4G3O43432 1585 aaKnown RBP34.86■■■■□ 3.17
SMC4-221ENST00000489573 GRIN2BQ13224 1484 aa34.84■■■■□ 3.17
SMC4-221ENST00000489573 DNAJC5Q9H3Z4 198 aa34.82■■■■□ 3.16
SMC4-221ENST00000489573 CEP162Q5TB80 1403 aa34.7■■■■□ 3.15
SMC4-221ENST00000489573 ADAMTS12P58397 1594 aa34.7■■■■□ 3.15
SMC4-221ENST00000489573 FHAD1B1AJZ9 1412 aa34.68■■■■□ 3.14
SMC4-221ENST00000489573 SNAPC4Q5SXM2 1469 aa34.64■■■■□ 3.14
SMC4-221ENST00000489573 MAGI1Q96QZ7 1491 aaPredicted RBP34.6■■■■□ 3.13
SMC4-221ENST00000489573 CLIP1P30622 1438 aa34.51■■■■□ 3.12
SMC4-221ENST00000489573 CTTNBP2Q8WZ74 1663 aa34.46■■■■□ 3.11
SMC4-221ENST00000489573 SYNJ2O15056 1496 aa34.45■■■■□ 3.11
SMC4-221ENST00000489573 GRIN2AQ12879 1464 aa34.41■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms