RNA–Protein interactions for RNA: ENST00000472991.5

SMC4-214, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-214ENST00000472991 AEBP2Q6ZN18 517 aaPredicted RBP28.38■■■□□ 2.13
SMC4-214ENST00000472991 CHIC1Q5VXU3 224 aa27.11■■□□□ 1.93
SMC4-214ENST00000472991 SENP3Q9H4L4 574 aaPredicted RBP24.14■■□□□ 1.45
SMC4-214ENST00000472991 PHF23Q9BUL5 403 aaPredicted RBP23.86■■□□□ 1.41
SMC4-214ENST00000472991 FOXD1Q16676 465 aa22.49■■□□□ 1.19
SMC4-214ENST00000472991 NISCHQ9Y2I1 1504 aa21.85■■□□□ 1.09
SMC4-214ENST00000472991 PLPPR3Q6T4P5 718 aa21.73■■□□□ 1.07
SMC4-214ENST00000472991 PPP6R1Q9UPN7 881 aa21.19■□□□□ 0.98
SMC4-214ENST00000472991 ADRA2BP18089 450 aa21.11■□□□□ 0.97
SMC4-214ENST00000472991 PIAS4Q8N2W9 510 aaPredicted RBP21.04■□□□□ 0.96
SMC4-214ENST00000472991 MSH5O43196 834 aa20.96■□□□□ 0.95
SMC4-214ENST00000472991 POTEDQ86YR6 584 aa20.15■□□□□ 0.82
SMC4-214ENST00000472991 CCDC180Q9P1Z9 1646 aa19.46■□□□□ 0.71
SMC4-214ENST00000472991 MAPK8IP2Q13387 824 aaPredicted RBP19.34■□□□□ 0.69
SMC4-214ENST00000472991 SCAF1Q9H7N4 1312 aaKnown RBP19.28■□□□□ 0.68
SMC4-214ENST00000472991 DMRT2Q9Y5R5 561 aa19.19■□□□□ 0.66
SMC4-214ENST00000472991 PPP4R3CPQ6ZMV5 832 aa19.07■□□□□ 0.64
SMC4-214ENST00000472991 ABCC9O60706 1549 aa18.79■□□□□ 0.6
SMC4-214ENST00000472991 CNKSR2Q8WXI2 1034 aa18.67■□□□□ 0.58
SMC4-214ENST00000472991 HOXD11P31277 338 aaPredicted RBP18.57■□□□□ 0.56
SMC4-214ENST00000472991 RNF216Q9NWF9 866 aaPredicted RBP18.47■□□□□ 0.55
SMC4-214ENST00000472991 NCBP3Q53F19 620 aaKnown RBP18.38■□□□□ 0.53
SMC4-214ENST00000472991 DCAF8L1A6NGE4 600 aa18.33■□□□□ 0.52
SMC4-214ENST00000472991 ZCCHC6Q5VYS8 1495 aaKnown RBP18.26■□□□□ 0.51
SMC4-214ENST00000472991 RB1CC1Q8TDY2 1594 aa18.17■□□□□ 0.5
SMC4-214ENST00000472991 NACADO15069 1562 aa18.17■□□□□ 0.5
SMC4-214ENST00000472991 NPM3O75607 178 aaKnown RBP18.15■□□□□ 0.5
SMC4-214ENST00000472991 DCAF8L2P0C7V8 631 aa18.12■□□□□ 0.49
SMC4-214ENST00000472991 MYO15BQ96JP2 1530 aa18.08■□□□□ 0.49
SMC4-214ENST00000472991 DCAF1Q9Y4B6 1507 aa18.08■□□□□ 0.49
SMC4-214ENST00000472991 KCNA4P22459 653 aa17.97■□□□□ 0.47
SMC4-214ENST00000472991 RNF39Q9H2S5 420 aa17.92■□□□□ 0.46
SMC4-214ENST00000472991 UNC13AQ9UPW8 1703 aa17.92■□□□□ 0.46
SMC4-214ENST00000472991 DNAJC5BQ9UF47 199 aa17.9■□□□□ 0.46
SMC4-214ENST00000472991 CACNB1Q02641 598 aaPredicted RBP17.84■□□□□ 0.45
SMC4-214ENST00000472991 SCRIBQ14160 1630 aa17.76■□□□□ 0.43
SMC4-214ENST00000472991 C1QBPQ07021 282 aaKnown RBP17.66■□□□□ 0.42
SMC4-214ENST00000472991 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.64■□□□□ 0.412e-7■■■■■ 32.9
SMC4-214ENST00000472991 BICRAQ9NZM4 1560 aa17.63■□□□□ 0.41
SMC4-214ENST00000472991 PABPN1Q86U42 306 aaKnown RBP eCLIP17.52■□□□□ 0.4
SMC4-214ENST00000472991 SHROOM4Q9ULL8 1493 aa17.41■□□□□ 0.38
SMC4-214ENST00000472991 U3KPZ7 1027 aaPredicted RBP17.33■□□□□ 0.36
SMC4-214ENST00000472991 SLC4A2P04920 1241 aa17.3■□□□□ 0.36
SMC4-214ENST00000472991 EIF4G1Q04637 1599 aaKnown RBP17.15■□□□□ 0.34
SMC4-214ENST00000472991 CC2D2AQ9P2K1 1620 aa17.04■□□□□ 0.32
SMC4-214ENST00000472991 SPINK5Q9NQ38 1064 aaPredicted RBP17.02■□□□□ 0.32
SMC4-214ENST00000472991 CECR2Q9BXF3 1484 aa17■□□□□ 0.31
SMC4-214ENST00000472991 SMARCA4P51532 1647 aa16.99■□□□□ 0.31
SMC4-214ENST00000472991 SLC4A1APQ9BWU0 796 aaKnown RBP16.98■□□□□ 0.31
SMC4-214ENST00000472991 BAZ1AQ9NRL2 1556 aaPredicted RBP16.94■□□□□ 0.3
SMC4-214ENST00000472991 CAPN15O75808 1086 aa16.94■□□□□ 0.3
SMC4-214ENST00000472991 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.87■□□□□ 0.29
SMC4-214ENST00000472991 HNRNPUL2Q1KMD3 747 aaKnown RBP16.87■□□□□ 0.29
SMC4-214ENST00000472991 MROH2BQ7Z745 1585 aa16.86■□□□□ 0.29
SMC4-214ENST00000472991 DSG3P32926 999 aa16.84■□□□□ 0.29
SMC4-214ENST00000472991 APLP2Q06481 763 aa16.82■□□□□ 0.28
SMC4-214ENST00000472991 SMARCA2P51531 1590 aa16.8■□□□□ 0.28
SMC4-214ENST00000472991 SAMD1Q6SPF0 538 aaPredicted RBP16.79■□□□□ 0.28
SMC4-214ENST00000472991 PEG3Q9GZU2 1588 aa16.78■□□□□ 0.28
SMC4-214ENST00000472991 MYCNP04198 464 aaPredicted RBP16.77■□□□□ 0.28
SMC4-214ENST00000472991 ATAD2BQ9ULI0 1458 aa16.77■□□□□ 0.28
SMC4-214ENST00000472991 WIZO95785 1651 aa16.75■□□□□ 0.27
SMC4-214ENST00000472991 HMGXB3Q12766 1538 aa16.72■□□□□ 0.27
SMC4-214ENST00000472991 TRHP20396 242 aaPredicted RBP16.72■□□□□ 0.27
SMC4-214ENST00000472991 ZNF219Q9P2Y4 722 aaPredicted RBP16.71■□□□□ 0.27
SMC4-214ENST00000472991 NCAPD3P42695 1498 aa16.71■□□□□ 0.27
SMC4-214ENST00000472991 FOXD4L1Q9NU39 408 aa16.69■□□□□ 0.26
SMC4-214ENST00000472991 RSF1Q96T23 1441 aaPredicted RBP16.69■□□□□ 0.26
SMC4-214ENST00000472991 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
SMC4-214ENST00000472991 ABCB7O75027 752 aa16.58■□□□□ 0.24
SMC4-214ENST00000472991 ZBTB22O15209 634 aa16.55■□□□□ 0.24
SMC4-214ENST00000472991 TOP2AP11388 1531 aaKnown RBP16.54■□□□□ 0.24
SMC4-214ENST00000472991 ATF5Q9Y2D1 282 aaPredicted RBP16.39■□□□□ 0.21
SMC4-214ENST00000472991 SUPT5HO00267 1087 aaKnown RBP16.37■□□□□ 0.21
SMC4-214ENST00000472991 POLA2Q14181 598 aa16.33■□□□□ 0.2
SMC4-214ENST00000472991 NESP48681 1621 aa16.32■□□□□ 0.2
SMC4-214ENST00000472991 LAMC3Q9Y6N6 1575 aa16.32■□□□□ 0.2
SMC4-214ENST00000472991 CCDC88BA6NC98 1476 aa16.3■□□□□ 0.2
SMC4-214ENST00000472991 PRDM2Q13029 1718 aa16.29■□□□□ 0.2
SMC4-214ENST00000472991 KIF21AQ7Z4S6 1674 aa16.24■□□□□ 0.19
SMC4-214ENST00000472991 CADPSQ9ULU8 1353 aa16.23■□□□□ 0.19
SMC4-214ENST00000472991 CFTRP13569 1480 aa16.19■□□□□ 0.18
SMC4-214ENST00000472991 ERCC6Q03468 1493 aa16.17■□□□□ 0.18
SMC4-214ENST00000472991 ATXN8OSP0DMR3 200 aa16.17■□□□□ 0.18
SMC4-214ENST00000472991 PDS5BQ9NTI5 1447 aa16.13■□□□□ 0.17
SMC4-214ENST00000472991 THOC2Q8NI27 1593 aaKnown RBP16.09■□□□□ 0.17
SMC4-214ENST00000472991 FANCD2Q9BXW9 1451 aa16.08■□□□□ 0.16
SMC4-214ENST00000472991 CEP164Q9UPV0 1460 aa16.07■□□□□ 0.16
SMC4-214ENST00000472991 RBM42Q9BTD8 480 aaKnown RBP16.04■□□□□ 0.16
SMC4-214ENST00000472991 ZBTB12Q9Y330 459 aaPredicted RBP16.01■□□□□ 0.15
SMC4-214ENST00000472991 MRC2Q9UBG0 1479 aa16■□□□□ 0.15
SMC4-214ENST00000472991 WDR62O43379 1518 aa15.96■□□□□ 0.15
SMC4-214ENST00000472991 CSRNP3Q8WYN3 585 aa15.94■□□□□ 0.14
SMC4-214ENST00000472991 CUX2O14529 1486 aa15.93■□□□□ 0.14
SMC4-214ENST00000472991 URB2Q14146 1524 aaKnown RBP15.93■□□□□ 0.14
SMC4-214ENST00000472991 DNMBPQ6XZF7 1577 aa15.89■□□□□ 0.13
SMC4-214ENST00000472991 TOPBP1Q92547 1522 aa15.86■□□□□ 0.13
SMC4-214ENST00000472991 ABCC8Q09428 1581 aa15.83■□□□□ 0.13
SMC4-214ENST00000472991 POTEHQ6S545 545 aa15.82■□□□□ 0.12
SMC4-214ENST00000472991 CUX1P39880 1505 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms