Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RUNDC3AQ59EK9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 MTMR9LP-203ENST00000426597 1545 ntBASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 AC068587.9-201ENST00000641814 219 ntBASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 AC133041.1-202ENST00000642053 222 ntBASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RUNDC3AQ59EK9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RUNDC3AQ59EK9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 AL499627.1-201ENST00000569373 2188 ntBASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 AC069152.1-201ENST00000438030 544 ntBASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 AC004264.1-201ENST00000608354 794 ntBASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RUNDC3AQ59EK9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
RUNDC3AQ59EK9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.77■□□□□ 0.43
RUNDC3AQ59EK9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RUNDC3AQ59EK9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RUNDC3AQ59EK9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms